Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00416 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTAATCTCTTGAGATTTGCAGATTCCAGGCTTCCCAAAGAAGAGGTCGATGCTCTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATGATGAGTCCTGTGCCGTTGAAATGTTTGGAGAATTCAGAAGACACAATCTGCCCGGTGTTCTTCCACCTGAAATCGTCAAGCTTCGTTACCTGAAAGAAATTGATTTTTCTTACAATTACCTTCATGGTAATATACCTCGGGAGTGGGCGCTATTGCAGGTGACATCAATCTCTCTTCTTGTAAATCGGTTCTCAGGGAAAATACCAGTGGAATTGGGGAATATTACTACTCTAGCACACCTGTCCCTTGAAGCAAACCAATTTTCTGGATCAATTCCATCAGAACTCGGGAGGTTAAGCAACCTAGAAACCTTGGTGCTATCATCTAATCAACTAACTGGCACATTGCCCACTACGTTTGCTGGTCTGGGAAACCTAATAGATTTCCGAATTAGTGATAACAACCTGACGGGAACCATACCCGACTTCATACAGAATTGGAAACTACTCTATAGATTAGTACTACATGGAAGTGGACTTCAGGGACCAATTCCTGCAAACATATCCCTTTTGATTAACTTAGAGGATTTGAGGATCAGCGATATTTGTGGCCCAACGCAGGGTTTTCCTGATTTGGTGAACATGACAGGCTTGGTTCAATTGGTTCTGAGAAATTGCAACATTGCTGGAAAGATACCTCCATATTTGTGGACGATACAGACTATGGAAATGATGGACCTCAGCTTTAATCAGTTGACTGGGGAAGTTCCAGAGGATACAGACTTGGAGCACATTAGATTTCTCTTCTTAACTGGCAATAAGCTGAGTGGCAACATACCAGATTCAATATTGAAGGATGGAACTAATGTAGATCTTTCATTCAATAACTTTACATGGCAAGGTCCTGAGCAGAATATGAATCTGAACTTGTATCGAAGTTCTTCCTCCAGCGACTCCTTGAGGCGGGAAAGTCTCCCCTGCTTGAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCATCAATTGCGGTGGGTATGACTTGACTAATGTGATAGACAACAACGACATTTTATACAATGGGGATGCAGATGTTGAAGGAGGGACGGCAAAATTATATGTCGATTATGATAGCTACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATCACGATTACCAAAATACACGTTACTCTTTTTCGCTGCCTTCATCAAACTTTTCCCAGATATATTCAACAGCACGTCGTTGTCCAATTTCGCTCACTTATTTCCATCAATGCTTGGAAAATGGAAACTACACAGTGAAGATTCATTTCGTGGAGTTACGATTTACAAATGACAAGACATATACGAGTCTTGGAAGACGGATATTTAATATCTACATTCAGGAAAAGTTAGTATTGGAGAATTTTGAAATTAAAGAAAGGGCAGGAGGAGCTCAAAAACTGATAGAATTGCAGTTTGATAACGTTAACGTAATTAACCACGTCCTCGAGATCCGATTCTATTGGGCTGGAAAAGGAACAACACGAATTCCTGATAGAGGAATTTATGGTCCACTGGTATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCTTTGAAAGTGGTCAAATGAAAACTGTAGCTATCTTCGTAAGGGGTGGAGTATTATGCCTTTCTATAATCATCATAGTGGGATTTCTTCATTGGAAAGGCACCCTTCGAGTATTCGGGCAGGGTAAAGACGATACAGATGTTGCAGGAATAGACGTACAAACTGGAATTTTTACATTGAAACAAATAAAAGCTGCCACCAATGATTTCGATTCTTCTAATAAAATTGGAGAAGGCGGTTTTGGCCCTGTTTATAAGGGTCAGTTGGCCGATGGTACCGTCGTAGCAATTAAGCAGCTCTCGTCCAAATCAAAGCAAGGAAATCGCGAATTTCTGAACGAGATAGGAGTGATCTCTTATTTGCAACACCCGAATCTAGTCAAGCTCCTTGGATGTTGTATTGAAGGGGATCAACTGTTGTTGGTGTATGAATATTTGGAAAACAATTGCCTTGCCCGAGCGCTATTTGGTCCAGAGTGCAGTCGTCCTAATTTAGATTGGCCAAGCAGGCTTAGAATCTGTATTGGTATAGCAAAAGGCTTAGCATATCTCCATGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTATTGGATGGCAAACTGAATCCTAAGATATCTGATTTTGGTTTGGCTAAGCATGACGATGAGGAGAAGACTCACATCACGACCCGAGTGGCCGGGACCATTGGATATATGGCTCCGGAATATGCTCTCTGGGGTTATCTGACCCACAAAGCAGACGTTTATAGTTTTGGAGTCGTGGCGTTGGAAGTTATCAGTGGAAGAAGCAACAATGACTACGTACCAAGTGACACTTGTGTTTGTCTTCTCGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCGTCGAGCTGGTTGATGAGAAGTTGAAGTCGGAAATCAACTGGTATGAAGCGAGAAACATGGTGAAAATTGCCCTTCTCTGCACGCATGCTTCACCATCGATAAGGCCTTCGATGTCGGAAGTGGTGAACATGCTCGAAGGACGATTGGAAATTCCAGACCTGGTTCTAGAACCAAGTTCTTATAATGAAGATTTGAGGTTCAAGGCAATGAGAGATATGCGTAAGGAGCAACAGAACCAAACCCCGAAGGCTGGCCAGACACAAACTTCCACAGCGCTATCATTTGAGTCTTCCCCTACATCTGGAAATGAGTTTTATGACATCAACCCATCTTCAAGTTCATCATTAACTTGA 2931 41.62 MMVAKSFFVFIVLNLLRFADSRLPKEEVDALQQITRTLGAVYWKFNDESCAVEMFGEFRRHNLPGVLPPEIVKLRYLKEIDFSYNYLHGNIPREWALLQVTSISLLVNRFSGKIPVELGNITTLAHLSLEANQFSGSIPSELGRLSNLETLVLSSNQLTGTLPTTFAGLGNLIDFRISDNNLTGTIPDFIQNWKLLYRLVLHGSGLQGPIPANISLLINLEDLRISDICGPTQGFPDLVNMTGLVQLVLRNCNIAGKIPPYLWTIQTMEMMDLSFNQLTGEVPEDTDLEHIRFLFLTGNKLSGNIPDSILKDGTNVDLSFNNFTWQGPEQNMNLNLYRSSSSSDSLRRESLPCLKDSICSKYSKCWFINCGGYDLTNVIDNNDILYNGDADVEGGTAKLYVDYDSYWGLSSTGDFMDDHDYQNTRYSFSLPSSNFSQIYSTARRCPISLTYFHQCLENGNYTVKIHFVELRFTNDKTYTSLGRRIFNIYIQEKLVLENFEIKERAGGAQKLIELQFDNVNVINHVLEIRFYWAGKGTTRIPDRGIYGPLVSAISVYSDLKYCSIFESGQMKTVAIFVRGGVLCLSIIIIVGFLHWKGTLRVFGQGKDDTDVAGIDVQTGIFTLKQIKAATNDFDSSNKIGEGGFGPVYKGQLADGTVVAIKQLSSKSKQGNREFLNEIGVISYLQHPNLVKLLGCCIEGDQLLLVYEYLENNCLARALFGPECSRPNLDWPSRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGKLNPKISDFGLAKHDDEEKTHITTRVAGTIGYMAPEYALWGYLTHKADVYSFGVVALEVISGRSNNDYVPSDTCVCLLDWACHLQQSGNLVELVDEKLKSEINWYEARNMVKIALLCTHASPSIRPSMSEVVNMLEGRLEIPDLVLEPSSYNEDLRFKAMRDMRKEQQNQTPKAGQTQTSTALSFESSPTSGNEFYDINPSSSSSLT 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2724288 2739807 + CmoCh18G004160.1 Cmo18g00416 402189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00416 976 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 344 952 - -
Cmo18g00416 976 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 254 328 - -
Cmo18g00416 976 ProSiteProfiles Protein kinase domain profile. 633 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00416 976 Gene3D Ribonuclease Inhibitor 43 163 IPR032675 -
Cmo18g00416 976 Gene3D Phosphorylase Kinase; domain 1 602 708 - -
Cmo18g00416 976 Gene3D - 363 559 - -
Cmo18g00416 976 Gene3D Ribonuclease Inhibitor 230 350 IPR032675 -
Cmo18g00416 976 MobiDBLite consensus disorder prediction 932 976 - -
Cmo18g00416 976 SUPERFAMILY Protein kinase-like (PK-like) 617 905 IPR011009 -
Cmo18g00416 976 CDD STKc_IRAK 639 906 - -
Cmo18g00416 976 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 254 - -
Cmo18g00416 976 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 344 952 - -
Cmo18g00416 976 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 47 254 - -
Cmo18g00416 976 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 254 328 - -
Cmo18g00416 976 Gene3D Transferase(Phosphotransferase) domain 1 709 912 - -
Cmo18g00416 976 SUPERFAMILY L domain-like 60 306 - -
Cmo18g00416 976 Pfam Malectin domain 365 553 IPR021720 -
Cmo18g00416 976 Gene3D Ribonuclease Inhibitor 164 229 IPR032675 -
Cmo18g00416 976 Pfam Protein tyrosine and serine/threonine kinase 636 904 IPR001245 GO:0004672|GO:0006468
Cmo18g00416 976 SMART serkin_6 633 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00416 976 MobiDBLite consensus disorder prediction 938 976 - -
Cmo18g00416 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00416 Cmo-Chr18:2724288 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo01g01316 Cmo-Chr1:10421966 Cmo18g00416 Cmo-Chr18:2724288 0 wgd
Cmo13g00605 Cmo-Chr13:6653499 Cmo18g00416 Cmo-Chr18:2724288 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75056 PF07714 PK_Tyr_Ser-Thr 5.70E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00416 - - cmax:111495536 1519.21