Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00417 ATGGAGACGAATACGAGTAACAACGGAGTGAGGTTTCTGCTAGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCAGACGGAGGAGGCGGCGGAGGCGGCGGAGGCGACGGAGGACGGGGAGGAGATCCATCCGGGAGTGAGATTGATGTATTCAGCAAATGAAGGCGATTTGGAAGCGATTAAGGAGCTTATAGATTCTGGAGTTGATGTTAATTTTCACGATGCTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGTTGCACGGAGATCGTCGATTTGTTGCTCCGGCGAGGAGCGGAGATTGACCCCAAAGACTGCTGGGGTAGTACGCCTCTCGCAGATGCTATATTCTACAAAAACCACGAAGTTATCAAATTATTGGAAAAAAGCGGCGCAAAACATCTGAAAGCTCCCATGCTCGTCAAGCATGCTCGTGAAGTCCCCGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTAACCAAGGGAACCTTCCATTTAGCATCATGGCGCGGAATCCGAGTTGCGGTCAAAGAGCTTCCCGAGGATGTGATTTCTGATGAGGATAAAGTGAACGCCTTTAGAGACGAGCTTGCATTGCTTCAGAAGATTCGACATCCGAACGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACCGAATATTTGCCTAAGGGAGATCTTTGCCAATTTTTACAGAAAAAAGGAGCTTTAAAACCAATTGTAGCTGTGAAATTTGCTCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAACAAACCCGCCCCGATCATCCACCGCGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAGCCTGAAAGTTGCAGACTTCGGAGTTAGCAAGCTGCTCACAGTCAAGGAGGATAAGCCACTGACTTGTCAAGACACTTCATGCCGATATGTTGCTCCAGAGGTTTTCAAGAACAATGGATATGATACTAAAGTGGATGTCTTCTCCTTTGCTTTAATACTACAAGAGATGATCGAAGGCCAACCGCCATTTTCAAACAAGAAAGAAAATGCTATTCTTAAAGATTATGCAGGCGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTACGCGCATGGAATCAAAGAGTTGATTGAAGATTGCTGGCATGAAAAGCCATCAAAGAGACCAAATTTTAGGCTGATAATCTCAAGGCTTGAAACCATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTTCCAACGCTGAGATGCTTTCAGAACGCAGAGGAGAAGATGAGAAGAGGCCATCTCTCAAGCAGCCGGAGCCTCTCATCGAGATCTGCAAGCAGCATATGA 1386 46.39 METNTSNNGVRFLLGKQSSMAPERQTEEAAEAAEATEDGEEIHPGVRLMYSANEGDLEAIKELIDSGVDVNFHDADNRTALHIAACQGCTEIVDLLLRRGAEIDPKDCWGSTPLADAIFYKNHEVIKLLEKSGAKHLKAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIRVAVKELPEDVISDEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLQKKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGSLKVADFGVSKLLTVKEDKPLTCQDTSCRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKDYAGGVRPAFKAPAKCYAHGIKELIEDCWHEKPSKRPNFRLIISRLETIHHSLSHRRRWKLPTLRCFQNAEEKMRRGHLSSSRSLSSRSASSI 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2743160 2748286 + CmoCh18G004170.1 Cmo18g00417 402190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00417 461 SUPERFAMILY Protein kinase-like (PK-like) 170 423 IPR011009 -
Cmo18g00417 461 PIRSF ILK 1 436 - -
Cmo18g00417 461 CDD STKc_MAP3K-like 170 414 - -
Cmo18g00417 461 MobiDBLite consensus disorder prediction 27 41 - -
Cmo18g00417 461 Pfam Ankyrin repeats (3 copies) 48 135 IPR002110 GO:0005515
Cmo18g00417 461 ProSiteProfiles Ankyrin repeat profile. 48 75 IPR002110 GO:0005515
Cmo18g00417 461 SMART ANK_2a 43 72 IPR002110 GO:0005515
Cmo18g00417 461 SMART ANK_2a 76 105 IPR002110 GO:0005515
Cmo18g00417 461 SMART ANK_2a 109 138 IPR002110 GO:0005515
Cmo18g00417 461 Pfam Protein tyrosine and serine/threonine kinase 170 414 IPR001245 GO:0004672|GO:0006468
Cmo18g00417 461 ProSiteProfiles Ankyrin repeat profile. 76 108 IPR002110 GO:0005515
Cmo18g00417 461 ProSiteProfiles Ankyrin repeat region circular profile. 76 107 - -
Cmo18g00417 461 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 12 444 - -
Cmo18g00417 461 MobiDBLite consensus disorder prediction 1 41 - -
Cmo18g00417 461 SUPERFAMILY Ankyrin repeat 47 135 IPR036770 -
Cmo18g00417 461 Gene3D Phosphorylase Kinase; domain 1 160 236 - -
Cmo18g00417 461 Gene3D - 15 149 IPR036770 -
Cmo18g00417 461 MobiDBLite consensus disorder prediction 1 24 - -
Cmo18g00417 461 Gene3D Transferase(Phosphotransferase) domain 1 237 457 - -
Cmo18g00417 461 ProSiteProfiles Protein kinase domain profile. 126 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00417 461 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 444 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01350 Cmo18g00417 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00417 Cmo-Chr18:2743160 Cmo20g00274 Cmo-Chr20:1334263 0 dispersed
Cmo18g00417 Cmo-Chr18:2743160 Cmo03g01350 Cmo-Chr3:9989335 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75057 PF07714 PK_Tyr_Ser-Thr 2.80E-55 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00417 - - csv:101205123 804.283