Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00419 ATGCTGTCAAACAACCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTAAGGGAGAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCTCACAGTCTGGGAGAATTCAACAGTTATGATCTGTTCTCTTTTTCTGGTGATAGTTGTGGGTCATTTAACGAGGAAGATATCTTAGAAGGGGTGTCAGTGGTAAAAGACATCATTGATGGGTTTCAAAGGCTAGAAGGGAGGACTTCTAAACAGCGCCTTCTAGTTGTAGCAAACAGATTGCCTGTGTCTGCTGTCAGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTTGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAACGTACCTGACGAAGTTGGACAGAGAGCCTTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAAGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATATTGTGGCCTCTATTTCATTATCTTGGTCTTCCACAAGAAGACCGACTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACAAAATGTTTGCTGATGTTGTAAACAAACATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTCAAAGAGCATAATCGTAAGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCGTCAGAAATACATAGAACTCTACCATCTCGGTCAGAGCTTTTGAGAGCTGTTCTTGCTGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGGTTGGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAGCTGACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGATCGATTCATTCGAGCTCTTAAACTTCCTCAAGTCCAGGAACACATTAAAGAACTTCAAGAAAGATTTGCTGGACGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTCTGGCTTTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGCGATAAAGTAGTTTTGCTGCAAATTGCTGTGCCAACAAGGACAGACGTTCCTGAGTATCAAAAGCTAACAAGTCAAGTTCATGAGATTGTTGGGCGTATTAATGGGAGGTTTGGTACTCTTACTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCCTGCATTATGTGCTTTATATGCTGTCACTGATGTGGCACTAGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGTCAAGCTTCCAAGAAAGGTGTTCTTATTCTGAGTGAGTTTGCTGGTGCAGCACAGTCATTAGGTGCTGGTGCTGTTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGGAAGCTGATGAAAGAGAAAGGCGACACCTTCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAACGACACCGTAGTTGAAGCTCAAATCAGGACCAGACAGATACCACCTTTACTTCCAATTAATGAGGCAGCGAACAGTTATTCGCGATCACATAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACTGAAGCAGTTGATGCCCTCGGAAGAAGATGTGGCCAAATTAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGTGATGACCGGAATACGACAGTGGTTGTCCTTAGTGGGAGTGACCGAAGTGTACTAGACGAGAATTTTGGTCAGTACAACATGTGGCTGGCAGCAGAAAACGGTATGTTCTTACGTCCTACGAAGGGAGAATGGATGACGACTATGCCCGAGAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACCGAAAGAACTCCTAGATCCCATTTCGAGCTTCGTGAAACTTCGCTGGTGTGGAATTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTTCGGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATCAACAAGCCTATTGACTATGTTCTCTGTGTTGGGCACTTCCTAGCCAAGGATGAAGATGTGTATACATTTTTCGAGCCCGACCTTCCTTCTGAAGTGCCACAAACAGTCCCGAATCCTTTACCACCGCCGAAGATGCCAAACAATGGAGCACCGCCGAAGTCGGCACGCCTGAAGAAACAACGTTCCCTTTCCATTATAGAAAGAAGAGCAAACAGCCATGGGAGTGCAGTGTTTTGGAGGCCTGTAGTGCAGGATCGATTGTCACTGCATGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCGTGTGCTGTGGGGCGGAAGCGATCGAACGCAAGATACCTTCTTGTTTCGTCGAATGATGTTGTCAAACTTGTGAAGGAGTTGTCGGAATGTTTGGAGTCAAGTGTGAGTTGA 2769 43.41 MLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEAHSLGEFNSYDLFSFSGDSCGSFNEEDILEGVSVVKDIIDGFQRLEGRTSKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEVGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANKMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQEHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMEADERERRHLHNFMHVTTHTSQEWAATFVSELNDTVVEAQIRTRQIPPLLPINEAANSYSRSHNRLVILGFNATLTEAVDALGRRCGQIRDMDLKVHPDVREPLKKLCDDRNTTVVVLSGSDRSVLDENFGQYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVRDKGINKPIDYVLCVGHFLAKDEDVYTFFEPDLPSEVPQTVPNPLPPPKMPNNGAPPKSARLKKQRSLSIIERRANSHGSAVFWRPVVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLVSSNDVVKLVKELSECLESSVS 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2755285 2763744 + CmoCh18G004190.1 Cmo18g00419 402192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00419 922 Coils Coil 17 37 - -
Cmo18g00419 922 SUPERFAMILY HAD-like 588 909 IPR036412 -
Cmo18g00419 922 Pfam Trehalose-phosphatase 614 813 IPR003337 GO:0003824|GO:0005992
Cmo18g00419 922 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 62 914 IPR001830 GO:0003824|GO:0005992
Cmo18g00419 922 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 90 555 IPR012766 GO:0003825|GO:0005992
Cmo18g00419 922 MobiDBLite consensus disorder prediction 813 830 - -
Cmo18g00419 922 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 558 - -
Cmo18g00419 922 MobiDBLite consensus disorder prediction 813 836 - -
Cmo18g00419 922 Gene3D Glycogen Phosphorylase B; 82 336 - -
Cmo18g00419 922 Gene3D Glycogen Phosphorylase B; 337 539 - -
Cmo18g00419 922 Pfam Glycosyltransferase family 20 90 555 IPR001830 GO:0003824|GO:0005992
Cmo18g00419 922 CDD GT20_TPS 90 555 IPR001830 GO:0003824|GO:0005992
Cmo18g00419 922 CDD HAD_TPP 588 808 - -
Cmo18g00419 922 PANTHER GLYCOSYL TRANSFERASE, FAMILY 20, TREHALOSE-PHOSPHATASE, HAD-LIKE DOMAIN PROTEIN-RELATED 62 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00419 Cmo-Chr18:2755285 Cmo04g01112 Cmo-Chr4:5669684 1.19E-146 dispersed
Cmo01g01325 Cmo-Chr1:10538104 Cmo18g00419 Cmo-Chr18:2755285 0 transposed
Cmo01g01324 Cmo-Chr1:10528280 Cmo18g00419 Cmo-Chr18:2755285 0 wgd
Cmo18g00419 Cmo-Chr18:2755285 Cmo19g01042 Cmo-Chr19:9093586 5.85E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00419 K16055 - csv:101213690 1663.66