Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00427 ATGGAGAAGAATCGGAGCGGAGAAAGAGGAGCGATGGCGTTTTCGTCCTCGGTGGATAGCAATATGAGGGCTCGTCTGAGTAACACCACTAGCACCGGCAACAGAGCTGCGGCACTTGTGCAATACAATGCCGATGCTGGAATTATGAGCAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAATTATTCGAGGTCAGTTCTTGAAGCTAATGAATCTGTTCCCGAAGAACAAATTGCTGCTTATCTGTCTAGGATTCAGAGGGGTGGGCTGGTTCAATCGTTTGGTTGTTTGCTTGCGATTGATGAGTCTAGTTTTAAGATTATTAGCTATAGTGAGAACTGTCTTGAAATTTTGGGGTTACATGATGAATTTGAGTCGGCACAGGGGAAGGGATTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCAGCTTCTTCCAGGGAGATTTCGTTGTTGAATCCTGTTTGGGTCTATTCTAGGACTACTCAGAAGCCATTTTATGCTATATTGCATAGGATTGATGTGGGGATTGTGATTGATTTAGAGCCTACACGATCTTTTGATCCTGCATTGTCGCTTGCTGGCACGGTTCAGTCACAGAAACTAGCGGTTCGGGCGATTTCTAGGCTGCAGGCTCTACCTGGTGGTGATATAGGTGTTCTGTGTGACACGGTTGTGGAAGATGTGCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATATCTCGGTTTGCATTATCCTGCCATTGATATACCGCAAGCTGCTCGTTTTTTGTTCAAGCAAAACCGCATCAGGATGATTTGTGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCCCATAGCTGTCATTTGCAGTACATGTCGAATATGGGTTCCTTAGCCTCGTTAGCAATGGCTGTAATCATGAATAGTGACGACTCGCCAACACGGTTATGGGGCTTGGTTGTGTGCCACCATACTTCTCCACGATATGTCCCTTTCCCACTTCGTTATGCTTGTGAGCTTCTCATCCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGTCATTACAATTAACAGAGAAAAAGATTCTCAAGACGCAAACGTTCCTCTGTGACATGCTTCTTCGAGGCTCCCCATGTGCATTGCTGATGCAGTCTCCTAGTATAATGGATCTTGTGAAGTGTGATGGTGCAGCATTGTACTATAATGCGGCATGTTGTTTACTTGGTATAACTCCAACTGAAGCACAAGTCAAAGATCTTGTAGAGTGGGTACTTAATAGCCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCCGAAGCTGCTTCTCTAGGTGATGCAGTGTGTGGTATGGCAGCTGCAAGAATTGGTTCCAAGGATTTCTTATTCTGGTTCAGGTCTCAGGCAGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCGGATATTAAGGACGATGGTGGAAAACTGCACCCAAGATCATCATTTAAAGCGTTTCTTGAAGTTGCAAAGAGTAGAAGTTTGCCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCGTTGCAGCTTATTATGAGGGAGTCTTTTTCTAACTCTAGGGACAGTGATTCAAAGGTAGAAGCTTCTGCCCAGCTGAGTGATACTGTAGTTCAGGATATCGATGAACTCAGTTCAGCAGCTTGCGAAATGGTGAGGTTGATTGAAACAGCAACTGTTCCAATTTTTGGGGTTGATTCAACTGGTGTGATCAATGGATGGAATGCTAAAATTTCTGAACTCGTAGGATTACAAACTAGTGAAGCATTGGGTAGATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTTGGAGATTTACTTTCCCATGCTCTTCAAGGTAAGGAAGACAACAATGTGGAGTTAAAACTGAGAAGTTTTCGATCTAATAAAGAAAATTCTACCATTTATATTGTCGTTAATGCTTGCACAAGTAGGGATTACACAAACAAAATTGTCGGGGTTTGCTTTGTCGGGAAAGATATTACGTCCGAGAAAGGTGTGATGGATAAATTTATACGTCTGCAGGGAGATTATAAGGCTATTATTGAAAGTTTGAGTCCATTGATCCCACCGATATTTGTTTCGGACGTGAACGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAGCTTTCTGGTTGGAGAAAAGATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATATTTGGAAATTTTTGTAGGTTGAAAGGTCTAGATACGCTCACTAGTTTTATGATCCTTTTATATCAAGGTATCGACGGTCAAGAAACCGAGAAGTTTCCGTTAGGATTTTTCAATAAGGATGGGAACTATGAGGAGGTTCTTTTAACATCAAACAAAAGAACTGATGCAGAAGGTAACATCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTGCATGGGGTCTCTGAAGGACTTGGAGTGGGCGACAGAGAGGGAAATTTGCAGCTTAAGGAGTTGACTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATTAGATTTACTCATGAACTTCTTGTAAATTCAGGCATTACAGAAAACCAGAAGCTCTTTCTCGATACCAGTGGCGCATGCGAGAGACAAATCATGACGATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCAAGTAGAGATAAACAGAGAAGAATTTATCCTCGGGAGTGTGCTGGACGCCATTATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAAAATACAACTTTTTCATGAGATTCCAGAAGAAATCAAAGTGTTAAATCTTTGTGGCGATCATATTAAGCTTCAGTTGGTTTTGTCAGATTTCTTGCTTAATGTCGTGCAGTACGCGCCTGTTCCGGATGGCTGGGTCGAAATCAAAATTTCATCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCTCATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGCCAGCAATGGACTTCAAAGCAAGGCCTTGCTCTAAACCTGTCACGTAGACTTCTCAATAAGTTGAGCGGTAACATACGCTACGTTAGAGAGCAAACTAAATGCTACTTCATCATCGATCTCGAGCTCAAATTAAGGCGCTCGAGAGGGTCGATGGAAGCTACTACAAGCCAAGGGACATGA 3393 43.06 MEKNRSGERGAMAFSSSVDSNMRARLSNTTSTGNRAAALVQYNADAGIMSKFEQSDASGESFNYSRSVLEANESVPEEQIAAYLSRIQRGGLVQSFGCLLAIDESSFKIISYSENCLEILGLHDEFESAQGKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPTRSFDPALSLAGTVQSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMSNMGSLASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACELLIQAFGLQLYMELQLSLQLTEKKILKTQTFLCDMLLRGSPCALLMQSPSIMDLVKCDGAALYYNAACCLLGITPTEAQVKDLVEWVLNSHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARIGSKDFLFWFRSQAAKEIQWGGAKHHPDIKDDGGKLHPRSSFKAFLEVAKSRSLPWEVQEINAIHSLQLIMRESFSNSRDSDSKVEASAQLSDTVVQDIDELSSAACEMVRLIETATVPIFGVDSTGVINGWNAKISELVGLQTSEALGRSLVNEIVHEDSRGTVGDLLSHALQGKEDNNVELKLRSFRSNKENSTIYIVVNACTSRDYTNKIVGVCFVGKDITSEKGVMDKFIRLQGDYKAIIESLSPLIPPIFVSDVNGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTSFMILLYQGIDGQETEKFPLGFFNKDGNYEEVLLTSNKRTDAEGNIIGCICFLQIVQPNLHGVSEGLGVGDREGNLQLKELTYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSGACERQIMTIIEDMDFRSLEGGQVEINREEFILGSVLDAIICQIMTVVREKKIQLFHEIPEEIKVLNLCGDHIKLQLVLSDFLLNVVQYAPVPDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSKQGLALNLSRRLLNKLSGNIRYVREQTKCYFIIDLELKLRRSRGSMEATTSQGT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2811865 2819141 - CmoCh18G004270.1 Cmo18g00427 402200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00427 1130 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Cmo18g00427 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cmo18g00427 1130 SMART pas_2 616 683 IPR000014 -
Cmo18g00427 1130 SMART pas_2 747 817 IPR000014 -
Cmo18g00427 1130 Pfam PAS fold 617 732 IPR013767 GO:0006355
Cmo18g00427 1130 Pfam PAS fold 748 867 IPR013767 GO:0006355
Cmo18g00427 1130 SUPERFAMILY GAF domain-like 208 395 - -
Cmo18g00427 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Cmo18g00427 1130 SMART gaf_1 228 409 IPR003018 GO:0005515
Cmo18g00427 1130 SUPERFAMILY GAF domain-like 407 584 - -
Cmo18g00427 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cmo18g00427 1130 Gene3D - 404 577 IPR043150 -
Cmo18g00427 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1113 IPR036890 -
Cmo18g00427 1130 CDD HisKA 894 949 IPR003661 GO:0000155|GO:0007165
Cmo18g00427 1130 CDD PAS 625 732 IPR000014 -
Cmo18g00427 1130 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Cmo18g00427 1130 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Cmo18g00427 1130 Pfam PAS fold 82 194 IPR013654 GO:0006355
Cmo18g00427 1130 Gene3D PAS domain 86 331 - -
Cmo18g00427 1130 Pfam GAF domain 228 399 IPR003018 GO:0005515
Cmo18g00427 1130 Gene3D - 209 560 IPR029016 -
Cmo18g00427 1130 Pfam His Kinase A (phospho-acceptor) domain 894 953 IPR003661 GO:0000155|GO:0007165
Cmo18g00427 1130 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Cmo18g00427 1130 PIRSF Phytochrome_conventional 15 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo18g00427 1130 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Cmo18g00427 1130 Gene3D PAS domain 615 736 - -
Cmo18g00427 1130 Gene3D - 933 1107 IPR036890 -
Cmo18g00427 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Cmo18g00427 1130 Gene3D PAS domain 761 872 - -
Cmo18g00427 1130 CDD PAS 759 867 IPR000014 -
Cmo18g00427 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cmo18g00427 1130 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Cmo18g00427 1130 SMART HKATPase_4 1001 1113 IPR003594 -
Cmo18g00427 1130 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cmo18g00427 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1119 - -
Cmo18g00427 1130 PANTHER PHYTOCHROME E 35 1119 - -
Cmo18g00427 1130 SMART HisKA_10 889 953 IPR003661 GO:0000155|GO:0007165
Cmo18g00427 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1111 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01560 Cmo-Chr6:10988616 Cmo18g00427 Cmo-Chr18:2811865 0 dispersed
Cmo14g01619 Cmo-Chr14:12864015 Cmo18g00427 Cmo-Chr18:2811865 0 dispersed
Cmo18g00427 Cmo-Chr18:2811865 Cmo19g00869 Cmo-Chr19:8367133 0 dispersed
Cmo13g00596 Cmo-Chr13:6604946 Cmo18g00427 Cmo-Chr18:2811865 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00427 K12123 - csv:101214900 1948.71