Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00440 ATGGGATGTTCTTGTCGGAAGCGGTTCTTGAAGCGGTTTTGCGCCGACGAGGTCCAAATCAATGGCGGCCTTCAAAGCAGTTTTGACCTCTTGCCTTCCCTTGGCGCCTCCATCAGCCACTCTACCAGCCTTCCTAAACGCATCATTTCCCCTTTCAACCCTTGTTATCGAGCATGGGAGATATGGCTAGTGATCCTAGTGATCTACTCAGCTTGGATATGTCCATTTGAATTTGCCTTTCTTCCCTACAAACAAAATGCTCTTTTCATCTTTGACAACGTTGTCAACGTGTTTTTCGCCGCCGACATCGTTTTAACATTCTTTGTCGCATATCTCGATGCTCGATCCTATGTTCTCGTCCACTCCCACAAAAAAATTGCACTCAGGTATTTGTCTACTTGGTTTGTTTTGGATGTTTGTTCGACTGCGCCATTACAATGGATAAGCTTCTTGCTCACGAACCGAACTCGGGAGGCTGGGTTCAAGCTTTTGAACATGCTCCGGCTATGGCGGCTCCATCGGGTCAGCTCTTTCTTTGCGAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGGTCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACACTGTGCTGGGTGCTTTAATTTTGTTATAGCCGACAAATATCCTGTCCCAAAACGAACATGGATTGGTGCAGCTAACCCTAATTTCAAGGAAGATAGCCTTTGGAATCTCTACGTTACTTCAATTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTCAAGAAATGTTGTTTGATATCTTTTACATGCTCTTCAATTTGGGGTTGACTTCTTATCTCATCGGTAACATGACGAATCTCGTCGTTCATCGGACTAGTCGGACCCAAAATTTCAGGGATTCGGTACGAGCTGCGACGGAGTTTGCGTCGAGAAACCAGTTACCGGATGGGATACGAAACCAGATGTTATCGCATATATGTCTCAAGTTCAAGACGGAGGGATTGAAGCAACAAGACACGTTGAATGAGCTTCCGAAAGCGATTAAAGCTTCCATTGCTCATTATCTGTTCTACCCAATTCTTCACAAAGCTTACCTTTTTGAAGGCGTTTCTCGTGACTTTCTTTCCCAATTGGTATCAGATGTGGAGGCCGAGTATTTCCCACCTAAGGAAGATATCATACTCCAAAACGAAGCTCAAACCGATCTCTATATATTGGTCTCGGGCAGCGTGGATCTAATATCGAACATTGAAGGCCATGATAAAGTTATTGGAAGAGCAATTGGTGGAGAAATGTTTGGAGAATTTGGAGTGTTATGTGAAAAGCCTCAACCTTTCAAAGTTCAAACCTCAAAGCTTTCTCAAATATTGAGGCTCAAGAGAGATTCTTTGTTGTATATTATTCAATCAAATTTGGAAGATGGGAATATTATAATGAATAATTTTTTCATGAAAAGGAAGGAATATGAACGAACGGGCGGTATTTGGAGCGACGGTGAGCTAAAGAGAAATGAAAACCGTTGTGAAGATGATGATGACGTTATTGAACGACTAGGGGAAATGGGAAGGCGAAGAAACGGGAACGTGGGAAGTTTAGACGAACATCGAATTGAGTTTGATGAGGTCGACTCGTTGGAAAATTTGGCGATAAGCTCTTGTTTGAATGATTCAAGAGGAATCAAGAAAAGGGTTACTGTACATATGAAGTCTCGAGATGGAAGTACGGTTGAGAGTCAATATGGGAAGTTAATGCTTCTCCCGGGTTCAGTAGAAGAGCTATGCACAATTGCAGGGAGAAAGTTTGGAGGAAAAATGGCCACAAAAGTTATGAGTGCGGATAATGCAGAAATTGATGATATAAGTGTGATTCGTGACGGTGACCATTTGTTTCTTCTTTATAATGATTGA 1932 42.55 MGCSCRKRFLKRFCADEVQINGGLQSSFDLLPSLGASISHSTSLPKRIISPFNPCYRAWEIWLVILVIYSAWICPFEFAFLPYKQNALFIFDNVVNVFFAADIVLTFFVAYLDARSYVLVHSHKKIALRYLSTWFVLDVCSTAPLQWISFLLTNRTREAGFKLLNMLRLWRLHRVSSFFARLEKDIRFNYFWVRCTKLISVTLFAVHCAGCFNFVIADKYPVPKRTWIGAANPNFKEDSLWNLYVTSIYWSITTLTTTGYGDLHAENPQEMLFDIFYMLFNLGLTSYLIGNMTNLVVHRTSRTQNFRDSVRAATEFASRNQLPDGIRNQMLSHICLKFKTEGLKQQDTLNELPKAIKASIAHYLFYPILHKAYLFEGVSRDFLSQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLISNIEGHDKVIGRAIGGEMFGEFGVLCEKPQPFKVQTSKLSQILRLKRDSLLYIIQSNLEDGNIIMNNFFMKRKEYERTGGIWSDGELKRNENRCEDDDDVIERLGEMGRRRNGNVGSLDEHRIEFDEVDSLENLAISSCLNDSRGIKKRVTVHMKSRDGSTVESQYGKLMLLPGSVEELCTIAGRKFGGKMATKVMSADNAEIDDISVIRDGDHLFLLYND 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2880696 2885789 + CmoCh18G004400.1 Cmo18g00440 402213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00440 643 Pfam KHA, dimerisation domain of potassium ion channel 570 639 IPR021789 -
Cmo18g00440 643 Pfam Cyclic nucleotide-binding domain 394 479 IPR000595 -
Cmo18g00440 643 PANTHER POTASSIUM CHANNEL KAT1 543 640 - -
Cmo18g00440 643 PANTHER POTASSIUM CHANNEL KAT1 1 502 - -
Cmo18g00440 643 ProSiteProfiles cAMP/cGMP binding motif profile. 374 493 IPR000595 -
Cmo18g00440 643 SUPERFAMILY cAMP-binding domain-like 301 490 IPR018490 -
Cmo18g00440 643 PANTHER POTASSIUM CHANNEL AKT1 1 502 IPR045319 GO:0005249|GO:0006813
Cmo18g00440 643 PANTHER POTASSIUM CHANNEL AKT1 543 640 IPR045319 GO:0005249|GO:0006813
Cmo18g00440 643 SUPERFAMILY Voltage-gated potassium channels 51 297 - -
Cmo18g00440 643 CDD CAP_ED 374 487 IPR000595 -
Cmo18g00440 643 PRINTS EAG/ELK/ERG potassium channel family signature 69 76 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo18g00440 643 PRINTS EAG/ELK/ERG potassium channel family signature 92 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo18g00440 643 PRINTS EAG/ELK/ERG potassium channel family signature 103 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo18g00440 643 PRINTS EAG/ELK/ERG potassium channel family signature 244 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo18g00440 643 PRINTS EAG/ELK/ERG potassium channel family signature 270 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo18g00440 643 PRINTS EAG/ELK/ERG potassium channel family signature 288 297 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo18g00440 643 Gene3D - 58 297 - -
Cmo18g00440 643 SMART cnmp_10 374 491 IPR000595 -
Cmo18g00440 643 Pfam Ion transport protein 57 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo18g00440 643 Gene3D Jelly Rolls 338 498 IPR014710 -
Cmo18g00440 643 ProSiteProfiles KHA domain profile. 571 643 IPR021789 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00587 Cmo18g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00413 Cmo-Chr16:1923154 Cmo18g00440 Cmo-Chr18:2880696 1.60E-173 dispersed
Cmo13g00587 Cmo-Chr13:6533380 Cmo18g00440 Cmo-Chr18:2880696 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00440 K21867 - csv:101215858 950.273