Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00468 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGCCTCCTGAAGTTCATGCTAGATTTATGTCCTTTTGTTGCCTTGGAGTTTTGTTTTGTGAGAGGAGGGTCCTGAATTCTGAGCTTTGGCATGCGTGTGCGGGTCCTCTTGTTTCTCTTCCGGCTGTTGGGAGTCGGGTTGTTTATTTTCCTCAAGGACATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTGGATACCCAGATCCCAAATTACCCAAGTTTACCACCGCAGCTCATCTGTCAACTTCACAACTTGACAATGCATGCGGATGCTGACACTGATGAAGTATACGCTCAGATGACTTTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACAAATTACTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGGGGGTTTTCGGTTCCTCGCCGTGCTGCTGAAAAAGTATTTCCTCCTTTGGACTTCTCCATGCAGCCTCCAGCCCAAGAGCTAATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATTTTTCGTGGTGGGAATGAAAAGAACCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCAGCCCATGCAGCTGCTACCAATAGTCGGTTTACCATATTCTTTAACCCGAGGTGTGAGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTCGGGATGCGCTTTCGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGAACGATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAATTCGCATTGGCGCTCGGTCAAGGTTAGTTGGCTGGGACGAGTCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATCGAACCATTAACAACATTTCCAATGTATCCATCACCGTTTCCACTTCGACTGAAGCGACAATGGCCAACTGGACTGCCTTCTTCTATGGGTACTCATGTCTAACTTCTCTATATGTTTTTCTTTTAGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAACAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAAATGGGGTCTCACCATGGATGCATCCGAGGCTTGATCCATCCATGGTCGGTATGCAATCCGACGTGTATCAAGCCATGGCTGCTGCAGCGCTTCAGGAGATGAGAGCGATCGATTATTCCAAACTAGCGCCTGCATCGATGCTGCAATTTCAGCAGCCTCAAGGTCTCCCTTGTCAGCCTTCAACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAATCTCAGCACGCGTTTCTGCAATCCGTTCAAGAACATCAGCAGCATTCTCAGTCCCAAACTCAAACTCAGTCACATCACCTTCCGCCACAATTGCAGCCCGAGCCGTCGTTCAATAATCAACAACCGCAGCATCAACAGCAACCAAGACAGCCACAGCCACAGCCACCGCCACAGCCACAGCCACTGGTTGATCATCAACCGATTCCTTGTACAATCCCTGCTATATCTCAGTTCGCTTCATGTTCACAATCCCAATCACCGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCCGATTCCAATGGTAACCCTGTAACCAGTCCTACTGTTTCCCCATTCCATAGTCTTGCAGGGTCGTTTGTCCAAGACGAATCGTCTCAGCTGCTTAACATTCAACGAGCAAATTCAGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGGGCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCAGTACTTTCTTCCTCAAGTAGAAAGTGGTATGTCTCAGAATACGGTTGCATTGCCACCCTTCCCCGGAAGGGAGTGTGCTATCGGTGATCGAGATGAGGGTGCAGATCCAGAAAACCATGTTCTATTTGGTGTGAACATAGAGTCTTCATCCCTTCTAATGCAGAATGGGACGTCGAACCTTAGGGGAGTCGGCAACGATAATGTTTCCACAACACTACCTTTTTCTTCCAACTACATGAGCTCATCCGGTACCGATTTTTCCGTAAATCCAACGACAAATTGCATTGACGAATCGGGTTTCTTGCAGCCTCATGAAAACGTGGGCCAAGTAAACCAACCAAATGGAACTTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCCTTAGATATAACAAAATTCAACAACTACCTCGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAACGACGTTCTTCTCCTTGGGGATGGCCCGTGGCCGGAGTTCGTAAACAGTGTATGGTGTATCAAAATACTTTCACCGGACGAAGTTCAGGAAATGGGGAAGCGCGGTTTAGAACTTCTCAACTCTATGCCAATCCAGAGGCATTCGAACAATACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTGATATCAGGGATAACCTCCGTCGGTCCTTTCGACTACTGA 2712 48.19 MRLSAAGFSPQPPEVHARFMSFCCLGVLFCERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDTQIPNYPSLPPQLICQLHNLTMHADADTDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGGNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRCEASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVSWLGRVNSRRAAAKSVLVGNRTINNISNVSITVSTSTEATMANWTAFFYGYSCLTSLYVFLLGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGNGVSPWMHPRLDPSMVGMQSDVYQAMAAAALQEMRAIDYSKLAPASMLQFQQPQGLPCQPSTLMQPQMLHQSQSQHAFLQSVQEHQQHSQSQTQTQSHHLPPQLQPEPSFNNQQPQHQQQPRQPQPQPPPQPQPLVDHQPIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPFHSLAGSFVQDESSQLLNIQRANSVIPSAGWPSKRAAIDPLSTGASQYFLPQVESGMSQNTVALPPFPGRECAIGDRDEGADPENHVLFGVNIESSSLLMQNGTSNLRGVGNDNVSTTLPFSSNYMSSSGTDFSVNPTTNCIDESGFLQPHENVGQVNQPNGTFVKVHKSGTYSRSLDITKFNNYLELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPDEVQEMGKRGLELLNSMPIQRHSNNTCDDYGSRQDSRNLISGITSVGPFDY 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3127927 3135522 - CmoCh18G004680.1 Cmo18g00468 402241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00468 903 CDD B3_DNA 141 210 IPR003340 GO:0003677
Cmo18g00468 903 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 201 882 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo18g00468 903 MobiDBLite consensus disorder prediction 486 539 - -
Cmo18g00468 903 Gene3D - 766 859 - -
Cmo18g00468 903 PANTHER AUXIN RESPONSE FACTOR 6 20 200 - -
Cmo18g00468 903 PANTHER AUXIN RESPONSE FACTOR 6 201 882 - -
Cmo18g00468 903 ProSiteProfiles PB1 domain profile. 770 854 IPR000270 GO:0005515
Cmo18g00468 903 MobiDBLite consensus disorder prediction 580 601 - -
Cmo18g00468 903 MobiDBLite consensus disorder prediction 540 558 - -
Cmo18g00468 903 SUPERFAMILY CAD & PB1 domains 759 845 - -
Cmo18g00468 903 MobiDBLite consensus disorder prediction 486 560 - -
Cmo18g00468 903 Gene3D - 140 218 IPR015300 -
Cmo18g00468 903 Gene3D - 279 340 - -
Cmo18g00468 903 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 200 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo18g00468 903 SUPERFAMILY DNA-binding pseudobarrel domain 127 242 IPR015300 -
Cmo18g00468 903 Pfam Auxin response factor 239 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo18g00468 903 Pfam AUX/IAA family 763 859 IPR033389 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00080 Cmo18g00468 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00468 Cmo-Chr18:3127927 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo13g00540 Cmo-Chr13:6272616 Cmo18g00468 Cmo-Chr18:3127927 0 wgd
Cmo18g00468 Cmo-Chr18:3127927 Cmo03g01425 Cmo-Chr3:10309688 0 wgd
Cmo18g00468 Cmo-Chr18:3127927 Cmo07g00080 Cmo-Chr7:500794 1.41E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11502 PF02309 AUX_IAA 1.10E-06 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00468 - - csv:101211705 1373.22