Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00473 ATGTTAGAAGAGATCGCTCGAGGATCAGACGCGGAGTTAGGTTACGAAGCAGCTGTTAATTCGAATTCGAGTCAGAACTCTATGAGTAGTGAGAGTTGTAGTAGCTTCAGTCGTCTCTCGTTTGATGCTGCGGTTGATTTTCCTACCTCCCGATTCTCGCCGGGGAGTCTCGATTTGAAGCCTCATCGATCGTCTGATTTCGCTTACTCCGCCATTCGTCGACGGAAATCCAAGCTTACTTTCCGTGATTTTCGGCTTCTCCGTCGCATCGGCGCTGGCGACATTGGTACCGTTTATCTATGCCAGTTGCGGAAATTGACCGACGGTGGCTATGATGATGAAGACGACGATTCGTGTTTGTACGCGATGAAAGTGGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGAAAAATATTGAAGATGCTGGATCATCCGTTTTTGCCTACTCTTTACGCTGAGTTTGAGGCGTCTCATTTCTCTTGCATCGTCATGGAGTTCTGTTCCGGCGGTGATTTGCACTCTCTCCGCCATAAACAGCCGCGTAAACGCTTCTCTCTCAGCTCCGCAAGTTCCATTTTCATTGAATTATCCTCTGGTTTTCTCTTCTTGATCAGGATTATTTTACTTCTGTTCTTGTTCAAGCAATTACTGCAACATGAACTGTGCATATATATATATATATGCATCTATATATTAGTTTTGTATTATGGTGTTGCTTGCTTTATGTACAAGCAAAATCTCTGTACTGCAATACAATATAATAGAACAAAATACCCAAAAACTGAGAAACCTGAACTTTTTATCCTGTTTTATGCTGCTGAAGTTCTCGTTGCTTTAGAGTACCTTCACATGCTTGGAATCATCTACAGAGACCTTAAGCCGGAGAATGTCCTTGTCCGATCGGACGGTCACATCATGCTGTCGGATTTCGATCTATCTCTCTGCTCGGATGCCACTCCGGCTGTTGAATCGCCGGATTCCTCCCCAAATTCGGCATTCCCCGATGCGATGGCGTACCCCAAATCCAACAGAACACCCACCGCCTCCGCCGCTACTACCAGCCCTTTTTCCTGCTTCTACAACCGGCTTTTCCGGTCACGCAAGGTCCAAACCCTGACTCCCAACTGGCTCTTCGTTGCCGAACCCGTCTCTGCTCGGTCCTGCTCCTTTGTCGGTACTCACGAGTATGTCTCGCCGGAAGTAGCCGCCGGCGGGTCACACGGCAACGCTGTTGACTGGTGGGCTTTTGGCGTATTTCTCTATGAGTTGATCTTCGGCCGGACGCCGTTTGCAGCTTCATCCAATGAGACAACGCTAAGAAACATCATAAAGAAGCCGTTGACGTTTCCGACCGCCGAGACCTCCGGCGTGCTTGAGCACCACGCGCGGGATCTAATATCCGGTTTGCTCAACAAGGACCCGACCCGGAGATTGGGTTCAAAACGCGGGTCTGCCGACATTAAGAAGCATCCATTCTTCAAAGGCCTTAACTTCGCCCTCATTCGGTCGCTCACGCCACCCGAGGTCCCCGGCGTACGACGGCGGAAGCCGGTTCCGGCGCCGGTGGCCAAATCCATGGACAAGGCAGCTGATTCGGGCGGGTTTGATTACTTCTGA 1641 49.6 MLEEIARGSDAELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAVDFPTSRFSPGSLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLTDGGYDDEDDDSCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSASSIFIELSSGFLFLIRIILLLFLFKQLLQHELCIYIYICIYILVLYYGVACFMYKQNLCTAIQYNRTKYPKTEKPELFILFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPDSSPNSAFPDAMAYPKSNRTPTASAATTSPFSCFYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIFGRTPFAASSNETTLRNIIKKPLTFPTAETSGVLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKPVPAPVAKSMDKAADSGGFDYF 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3196968 3199712 - CmoCh18G004730.1 Cmo18g00473 402246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00473 546 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 261 524 - -
Cmo18g00473 546 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 199 - -
Cmo18g00473 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Cmo18g00473 546 ProSiteProfiles Protein kinase domain profile. 84 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00473 546 PANTHER FLIPPASE KINASE 1-RELATED 261 524 - -
Cmo18g00473 546 PANTHER FLIPPASE KINASE 1-RELATED 1 199 - -
Cmo18g00473 546 Gene3D Phosphorylase Kinase; domain 1 243 253 - -
Cmo18g00473 546 MobiDBLite consensus disorder prediction 518 546 - -
Cmo18g00473 546 Gene3D Transferase(Phosphotransferase) domain 1 394 519 - -
Cmo18g00473 546 SUPERFAMILY Protein kinase-like (PK-like) 66 518 IPR011009 -
Cmo18g00473 546 Gene3D Phosphorylase Kinase; domain 1 76 204 - -
Cmo18g00473 546 Pfam Protein kinase domain 252 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00473 546 Pfam Protein kinase domain 395 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00473 546 Pfam Protein kinase domain 85 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00473 546 Coils Coil 123 150 - -
Cmo18g00473 546 Gene3D Transferase(Phosphotransferase) domain 1 254 322 - -
Cmo18g00473 546 SMART serkin_6 84 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00533 Cmo18g00473 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00473 Cmo-Chr18:3196968 Cmo07g00896 Cmo-Chr7:4259422 3.10E-116 dispersed
Cmo13g00533 Cmo-Chr13:6233697 Cmo18g00473 Cmo-Chr18:3196968 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75058 PF00069 Pkinase 1.90E-18 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00473 - - csv:101208129 480.33