Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00473 | ATGTTAGAAGAGATCGCTCGAGGATCAGACGCGGAGTTAGGTTACGAAGCAGCTGTTAATTCGAATTCGAGTCAGAACTCTATGAGTAGTGAGAGTTGTAGTAGCTTCAGTCGTCTCTCGTTTGATGCTGCGGTTGATTTTCCTACCTCCCGATTCTCGCCGGGGAGTCTCGATTTGAAGCCTCATCGATCGTCTGATTTCGCTTACTCCGCCATTCGTCGACGGAAATCCAAGCTTACTTTCCGTGATTTTCGGCTTCTCCGTCGCATCGGCGCTGGCGACATTGGTACCGTTTATCTATGCCAGTTGCGGAAATTGACCGACGGTGGCTATGATGATGAAGACGACGATTCGTGTTTGTACGCGATGAAAGTGGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGAAAAATATTGAAGATGCTGGATCATCCGTTTTTGCCTACTCTTTACGCTGAGTTTGAGGCGTCTCATTTCTCTTGCATCGTCATGGAGTTCTGTTCCGGCGGTGATTTGCACTCTCTCCGCCATAAACAGCCGCGTAAACGCTTCTCTCTCAGCTCCGCAAGTTCCATTTTCATTGAATTATCCTCTGGTTTTCTCTTCTTGATCAGGATTATTTTACTTCTGTTCTTGTTCAAGCAATTACTGCAACATGAACTGTGCATATATATATATATATGCATCTATATATTAGTTTTGTATTATGGTGTTGCTTGCTTTATGTACAAGCAAAATCTCTGTACTGCAATACAATATAATAGAACAAAATACCCAAAAACTGAGAAACCTGAACTTTTTATCCTGTTTTATGCTGCTGAAGTTCTCGTTGCTTTAGAGTACCTTCACATGCTTGGAATCATCTACAGAGACCTTAAGCCGGAGAATGTCCTTGTCCGATCGGACGGTCACATCATGCTGTCGGATTTCGATCTATCTCTCTGCTCGGATGCCACTCCGGCTGTTGAATCGCCGGATTCCTCCCCAAATTCGGCATTCCCCGATGCGATGGCGTACCCCAAATCCAACAGAACACCCACCGCCTCCGCCGCTACTACCAGCCCTTTTTCCTGCTTCTACAACCGGCTTTTCCGGTCACGCAAGGTCCAAACCCTGACTCCCAACTGGCTCTTCGTTGCCGAACCCGTCTCTGCTCGGTCCTGCTCCTTTGTCGGTACTCACGAGTATGTCTCGCCGGAAGTAGCCGCCGGCGGGTCACACGGCAACGCTGTTGACTGGTGGGCTTTTGGCGTATTTCTCTATGAGTTGATCTTCGGCCGGACGCCGTTTGCAGCTTCATCCAATGAGACAACGCTAAGAAACATCATAAAGAAGCCGTTGACGTTTCCGACCGCCGAGACCTCCGGCGTGCTTGAGCACCACGCGCGGGATCTAATATCCGGTTTGCTCAACAAGGACCCGACCCGGAGATTGGGTTCAAAACGCGGGTCTGCCGACATTAAGAAGCATCCATTCTTCAAAGGCCTTAACTTCGCCCTCATTCGGTCGCTCACGCCACCCGAGGTCCCCGGCGTACGACGGCGGAAGCCGGTTCCGGCGCCGGTGGCCAAATCCATGGACAAGGCAGCTGATTCGGGCGGGTTTGATTACTTCTGA | 1641 | 49.6 | MLEEIARGSDAELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAVDFPTSRFSPGSLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLTDGGYDDEDDDSCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSASSIFIELSSGFLFLIRIILLLFLFKQLLQHELCIYIYICIYILVLYYGVACFMYKQNLCTAIQYNRTKYPKTEKPELFILFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPDSSPNSAFPDAMAYPKSNRTPTASAATTSPFSCFYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIFGRTPFAASSNETTLRNIIKKPLTFPTAETSGVLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKPVPAPVAKSMDKAADSGGFDYF | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 3196968 | 3199712 | - | CmoCh18G004730.1 | Cmo18g00473 | 402246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00473 | 546 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 261 | 524 | - | - | |
Cmo18g00473 | 546 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 1 | 199 | - | - | |
Cmo18g00473 | 546 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 295 | 307 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo18g00473 | 546 | ProSiteProfiles | Protein kinase domain profile. | 84 | 501 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00473 | 546 | PANTHER | FLIPPASE KINASE 1-RELATED | 261 | 524 | - | - | |
Cmo18g00473 | 546 | PANTHER | FLIPPASE KINASE 1-RELATED | 1 | 199 | - | - | |
Cmo18g00473 | 546 | Gene3D | Phosphorylase Kinase; domain 1 | 243 | 253 | - | - | |
Cmo18g00473 | 546 | MobiDBLite | consensus disorder prediction | 518 | 546 | - | - | |
Cmo18g00473 | 546 | Gene3D | Transferase(Phosphotransferase) domain 1 | 394 | 519 | - | - | |
Cmo18g00473 | 546 | SUPERFAMILY | Protein kinase-like (PK-like) | 66 | 518 | IPR011009 | - | |
Cmo18g00473 | 546 | Gene3D | Phosphorylase Kinase; domain 1 | 76 | 204 | - | - | |
Cmo18g00473 | 546 | Pfam | Protein kinase domain | 252 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00473 | 546 | Pfam | Protein kinase domain | 395 | 501 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00473 | 546 | Pfam | Protein kinase domain | 85 | 210 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00473 | 546 | Coils | Coil | 123 | 150 | - | - | |
Cmo18g00473 | 546 | Gene3D | Transferase(Phosphotransferase) domain 1 | 254 | 322 | - | - | |
Cmo18g00473 | 546 | SMART | serkin_6 | 84 | 501 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo13g00533 | Cmo18g00473 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00473 | Cmo-Chr18:3196968 | Cmo07g00896 | Cmo-Chr7:4259422 | 3.10E-116 | dispersed | |
Cmo13g00533 | Cmo-Chr13:6233697 | Cmo18g00473 | Cmo-Chr18:3196968 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75058 | PF00069 | Pkinase | 1.90E-18 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00473 | - | - | csv:101208129 | 480.33 |