Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00479 ATGGGTCAACCGAACAGTGACGCCGGTGGTGGAGAAGAGATCCGAAGAAGATCCTGTGGTTGTTCGAAGCAAGATTTTCTACCAGAAGAGTCGTTCAAGAGTTGGGGAAATTACACTAGAGCGCTGAAGGCCACGCCGGCCCGGCTCTTGGATCGGCTCACGGCCAGGTCCGGGGATCACATCGAGCTCGTCGAGATGAAGGCTCGGAGCCAGCACGAGATGAAGAAGAGCCTCACGTGGTGGGACCTTATGTGGTTCGGTATCGGCGCTGTCATCGGCGCCGGAATATTTGTCCTCACCGGTCTTGAGACTAAGAAACACGCTGGCCCAGCCGTCGTCTTGTCTTATGTCGTCTCCGGTGTCTCCGCCATGCTTTCCGTCTTCTGTTACACTGAGTTCGCCGTCGAGATTCCGGCAGCCGGTGGATCATTCGCCTACCTAAGGGTAGAACTAGGAGACTTTGTGGCATTCATCGCGGCGGGCAACATCCTCCTCGAATATGTAATTGGTGGCGCTGCGGTGGCCCGTTCATGGACATCATACTTTGCCACTTTGTGCAATCGTCATCCGAACGATTTTCGCATCCACGTCTCGTCTTTCCCTGACGACTATAACCAGCTCGACCCCATTGCCATTGTCGTGATCATTGTCATTTGCACTTTAGCCATAGCAAGCACCAAAGGCTCCTCTCGCTTCAACTACATTGCTTCCATTTTCCACGTTGCCATCATTCTCTTCATTGTCATTGCCGGCCTAACCAAGGCCAACCCGAAAAACTTCACTCCCTTTGCCCCCTATGGCCCTCGTGGCATCTTCGTAGCCTCGGCTGTTTTGTTCTTTGCATACGTTGGATTTGACGCGGTTTCGACAATGGCTGAGGAAACTAAGAACCCTGCTAAAGATATACCTATTGGTCTTGTTGGGTCAATGGTGATCACCACATTAGCCTATTGCATTCTTGCGGTTACGTTGTGTTTGATGCAGCCTTACCAAGAAATTGATGAGGATGCGCCGTTTTCAGTGGCTTTTGAGGCTGTTGGATGGGGTTGGGCTAAGTACATTGTCGCTGCTGGTGCTATTAAAGGCATGACCACCGTGTTGTTGGTTAGTGCTGTTGGACAGGCTCGCTATCTCACGCACATTGCCAGATCCCACATGATCTCACCATGGTTCGCCAAAGTGCATGAAAGGACTGGCACTCCAGTGAATGCAACAGCCACAATGCTCGCTGCAACAGCAATAATTGCCTTCTTTACAAGTTTGGGAATCCTCTCAAACCTCCTTTCTATCTCCACCCTCTTCATCTTCATGTTGGTCGCCCTCGGCCTAATCGTTCGACGCTACTATGTCAGTGGTGAAACGACACCATCCGACCGAAACAAGCTCATAATCTGCCTGGTTCTAATCCTCGGATCTTCAATAGCAACCGCCGTATACTGGGGCTCGAGCAACGGTTGGATCGGCTTGGTAGTGTCCAATTCCATATGGTTTCTCTCAACTCTAGCCCTATGGTTTGGTGTCCCACAAGCCAAAAAGCCACGTGTGTGGGGTGTGCCGCTCGTCCCGTGGGTGCCTTCATTATCAATCGCCATCAACCTTTTCCTTCTTGGGTCGATCGACAAAGCTTCATTTGAAAGGTTTGGAATCTGGACTGGGATTCTGTTGGTTTACTATTTCTTGATTGGATTACATGCTTCTTATGATTCGGTTATGGAGTCCAAGACGGTAGCAGGAGAAGTTAATAGCAGTGTGTGA 1755 50.6 MGQPNSDAGGGEEIRRRSCGCSKQDFLPEESFKSWGNYTRALKATPARLLDRLTARSGDHIELVEMKARSQHEMKKSLTWWDLMWFGIGAVIGAGIFVLTGLETKKHAGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPAAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAVARSWTSYFATLCNRHPNDFRIHVSSFPDDYNQLDPIAIVVIIVICTLAIASTKGSSRFNYIASIFHVAIILFIVIAGLTKANPKNFTPFAPYGPRGIFVASAVLFFAYVGFDAVSTMAEETKNPAKDIPIGLVGSMVITTLAYCILAVTLCLMQPYQEIDEDAPFSVAFEAVGWGWAKYIVAAGAIKGMTTVLLVSAVGQARYLTHIARSHMISPWFAKVHERTGTPVNATATMLAATAIIAFFTSLGILSNLLSISTLFIFMLVALGLIVRRYYVSGETTPSDRNKLIICLVLILGSSIATAVYWGSSNGWIGLVVSNSIWFLSTLALWFGVPQAKKPRVWGVPLVPWVPSLSIAINLFLLGSIDKASFERFGIWTGILLVYYFLIGLHASYDSVMESKTVAGEVNSSV 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3299988 3303005 + CmoCh18G004790.1 Cmo18g00479 402252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00479 584 PIRSF AA_transporter 461 581 - -
Cmo18g00479 584 PIRSF AA_transporter 62 485 - -
Cmo18g00479 584 PANTHER CATIONIC AMINO ACID TRANSPORTER 1 13 575 - -
Cmo18g00479 584 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 13 575 - -
Cmo18g00479 584 Pfam Amino acid permease 78 448 IPR002293 GO:0016020|GO:0022857|GO:0055085
Cmo18g00479 584 Gene3D Amino acid/polyamine transporter I 72 512 - -
Cmo18g00479 584 Pfam C-terminus of AA_permease 516 566 IPR029485 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00525 Cmo18g00479 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01615 Cmo-Chr2:9306550 Cmo18g00479 Cmo-Chr18:3299988 8.15E-140 dispersed
Cmo15g00535 Cmo-Chr15:2531126 Cmo18g00479 Cmo-Chr18:3299988 5.60E-134 dispersed
Cmo18g00479 Cmo-Chr18:3299988 Cmo18g00480 Cmo-Chr18:3306302 0 tandem
Cmo01g00941 Cmo-Chr1:5546740 Cmo18g00479 Cmo-Chr18:3299988 1.64E-91 transposed
Cmo13g00868 Cmo-Chr13:7917469 Cmo18g00479 Cmo-Chr18:3299988 0 transposed
Cmo16g00488 Cmo-Chr16:2341707 Cmo18g00479 Cmo-Chr18:3299988 0 transposed
Cmo18g00601 Cmo-Chr18:6622857 Cmo18g00479 Cmo-Chr18:3299988 2.16E-18 transposed
Cmo13g00525 Cmo-Chr13:6153955 Cmo18g00479 Cmo-Chr18:3299988 1.04E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00479 K03294 - csv:101212046 989.178