Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00486 ATGAGTCATTTTTCAGGGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCTGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTGTATGCTTAAAATGTAGTGGTGTACACAGAAACCTTGGAACGCATATATCAAAGGTTTTATCAATAACATTGGATGAATGGACTGATGATGAGATTGATGCCATGATGGAGGTTGGAGGAAATGGTTTTGCTAATTCAATATATGAGGCTTTTATTCCTGATGGATATACAAAGCCTGGACCGAGTGCTAGCCATGAGGAGCGTTCAAAGTTCATAAAGTCCAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTATACCCAATAACTCCTCAAAGACTCCTGAGGAGCCAAGTTGTTTTCAGGTGAACTCTTCAAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGACTACTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATATGAAATCCAGTGATCCTTTCATTACTGTGACTCTTGGGCAACAGACTGCAAAAACAACGGTGAAAAAGAAAAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAAGAATACGGTCCCTTAGAGTTGAAAGTGTTCGATCTCGACACTGTTTCATCTAATGACTTGATGGGTGAAGCAGAAATCGACCTCCAGCCAATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATATATGGGGATATGCAGATAGGAAAATGGTTGAAATCAGACGACAACGCCCTTATCGACGACAGTGCTGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCGCTCAAGCTCGGAAACGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAGTAG 978 40.7 MSHFSGDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFVCLKCSGVHRNLGTHISKVLSITLDEWTDDEIDAMMEVGGNGFANSIYEAFIPDGYTKPGPSASHEERSKFIKSKYELQEFLKPSLRIIPNNSSKTPEEPSCFQVNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITVTLGQQTAKTTVKKKNLNPVWNEELMLSVPQEYGPLELKVFDLDTVSSNDLMGEAEIDLQPMLTSAMAFGDAEIYGDMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLGNVESGEVYLELEWMPLDQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3337349 3340789 + CmoCh18G004860.1 Cmo18g00486 402259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00486 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 325 IPR044518 GO:0005096|GO:0005543
Cmo18g00486 325 Gene3D C2 domain 167 325 IPR035892 -
Cmo18g00486 325 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cmo18g00486 325 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cmo18g00486 325 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cmo18g00486 325 Pfam C2 domain 169 260 IPR000008 -
Cmo18g00486 325 ProSiteProfiles C2 domain profile. 152 268 IPR000008 -
Cmo18g00486 325 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096
Cmo18g00486 325 SMART C2_3c 170 265 IPR000008 -
Cmo18g00486 325 MobiDBLite consensus disorder prediction 137 157 - -
Cmo18g00486 325 Gene3D Arf GTPase activating protein 5 135 IPR038508 -
Cmo18g00486 325 CDD ArfGap 18 124 - -
Cmo18g00486 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 325 - -
Cmo18g00486 325 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 167 323 IPR035892 -
Cmo18g00486 325 CDD C2_ArfGAP 169 312 - -
Cmo18g00486 325 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cmo18g00486 325 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cmo18g00486 325 SMART arf_gap_3 15 137 IPR001164 GO:0005096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00063 Cmo18g00486 CCT
Cmo03g01445 Cmo18g00486 CCT
Cmo13g00522 Cmo18g00486 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00486 Cmo-Chr18:3337349 Cmo18g00872 Cmo-Chr18:10020555 5.84E-104 dispersed
Cmo13g00522 Cmo-Chr13:6123425 Cmo18g00486 Cmo-Chr18:3337349 0 wgd
Cmo18g00486 Cmo-Chr18:3337349 Cmo03g01445 Cmo-Chr3:10467242 5.84E-159 wgd
Cmo18g00486 Cmo-Chr18:3337349 Cmo07g00063 Cmo-Chr7:358765 1.32E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00486 K12486 - csv:101211569 554.288