Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00486 | ATGAGTCATTTTTCAGGGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCTGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTGTATGCTTAAAATGTAGTGGTGTACACAGAAACCTTGGAACGCATATATCAAAGGTTTTATCAATAACATTGGATGAATGGACTGATGATGAGATTGATGCCATGATGGAGGTTGGAGGAAATGGTTTTGCTAATTCAATATATGAGGCTTTTATTCCTGATGGATATACAAAGCCTGGACCGAGTGCTAGCCATGAGGAGCGTTCAAAGTTCATAAAGTCCAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTATACCCAATAACTCCTCAAAGACTCCTGAGGAGCCAAGTTGTTTTCAGGTGAACTCTTCAAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGACTACTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATATGAAATCCAGTGATCCTTTCATTACTGTGACTCTTGGGCAACAGACTGCAAAAACAACGGTGAAAAAGAAAAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAAGAATACGGTCCCTTAGAGTTGAAAGTGTTCGATCTCGACACTGTTTCATCTAATGACTTGATGGGTGAAGCAGAAATCGACCTCCAGCCAATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATATATGGGGATATGCAGATAGGAAAATGGTTGAAATCAGACGACAACGCCCTTATCGACGACAGTGCTGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCGCTCAAGCTCGGAAACGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAGTAG | 978 | 40.7 | MSHFSGDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFVCLKCSGVHRNLGTHISKVLSITLDEWTDDEIDAMMEVGGNGFANSIYEAFIPDGYTKPGPSASHEERSKFIKSKYELQEFLKPSLRIIPNNSSKTPEEPSCFQVNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITVTLGQQTAKTTVKKKNLNPVWNEELMLSVPQEYGPLELKVFDLDTVSSNDLMGEAEIDLQPMLTSAMAFGDAEIYGDMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLGNVESGEVYLELEWMPLDQ | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 3337349 | 3340789 | + | CmoCh18G004860.1 | Cmo18g00486 | 402259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00486 | 325 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 9 | 325 | IPR044518 | GO:0005096|GO:0005543 | |
Cmo18g00486 | 325 | Gene3D | C2 domain | 167 | 325 | IPR035892 | - | |
Cmo18g00486 | 325 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096 | |
Cmo18g00486 | 325 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096 | |
Cmo18g00486 | 325 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096 | |
Cmo18g00486 | 325 | Pfam | C2 domain | 169 | 260 | IPR000008 | - | |
Cmo18g00486 | 325 | ProSiteProfiles | C2 domain profile. | 152 | 268 | IPR000008 | - | |
Cmo18g00486 | 325 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 143 | IPR001164 | GO:0005096 | |
Cmo18g00486 | 325 | SMART | C2_3c | 170 | 265 | IPR000008 | - | |
Cmo18g00486 | 325 | MobiDBLite | consensus disorder prediction | 137 | 157 | - | - | |
Cmo18g00486 | 325 | Gene3D | Arf GTPase activating protein | 5 | 135 | IPR038508 | - | |
Cmo18g00486 | 325 | CDD | ArfGap | 18 | 124 | - | - | |
Cmo18g00486 | 325 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 | 9 | 325 | - | - | |
Cmo18g00486 | 325 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 167 | 323 | IPR035892 | - | |
Cmo18g00486 | 325 | CDD | C2_ArfGAP | 169 | 312 | - | - | |
Cmo18g00486 | 325 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096 | |
Cmo18g00486 | 325 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 132 | IPR037278 | - | |
Cmo18g00486 | 325 | SMART | arf_gap_3 | 15 | 137 | IPR001164 | GO:0005096 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo07g00063 | Cmo18g00486 | CCT | |
Cmo03g01445 | Cmo18g00486 | CCT | |
Cmo13g00522 | Cmo18g00486 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00486 | Cmo-Chr18:3337349 | Cmo18g00872 | Cmo-Chr18:10020555 | 5.84E-104 | dispersed | |
Cmo13g00522 | Cmo-Chr13:6123425 | Cmo18g00486 | Cmo-Chr18:3337349 | 0 | wgd | |
Cmo18g00486 | Cmo-Chr18:3337349 | Cmo03g01445 | Cmo-Chr3:10467242 | 5.84E-159 | wgd | |
Cmo18g00486 | Cmo-Chr18:3337349 | Cmo07g00063 | Cmo-Chr7:358765 | 1.32E-174 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00486 | K12486 | - | csv:101211569 | 554.288 |