Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00508 ATGTTCTGCAATTTGTTTGAGATGGACAATGATAACTATCAGCAAGCGGGGGATTTGACCGATGTAATTCGAGCTAGTTCCGCCGCCACCTCAGCTGCCCACTCATCGGAATTCTCTCTCGGCGACCGCCATCTCTTGCCTCACCTTCCCGCCGATGACTCTTCCATGAATTTTGGAGATCCCTTGTTGCTTCCCACTTCTAGTACTCGAGATCCGTTTCTTCATCCCCATTTCTCTTCCTTCAATTTTGATTCTCACGGCGGCGGTTGGGGTTTCACGGCGGCGGAACGGCCTTCTACTGTATTTCCAAGAATGTTGCAGATCTCTCCCACCTCCAAAGTTGGTGACGGTGTAATTACTACTCCTCCATGCGACTCACCGGCCGTGGCCGTAACGGGGAATTCTCCGACCTCAAACCCGCTTTGCTTAAGGGATAATTCCGACCTCCAGATCTCTCCTCCAAGAAATCCCGCCCTTAAAAGAAGGAAGAATCAAGTGAAGAAGGTGGTGTGCATTCCGGCGCCGGCGCCGGCAAACAGCCGATCAAGCAGCGGCGAAGTTGTCCCCTCCGATCTATGGGCATGGAGGAAGTACGGACAAAAACCCATCAAAGGATCTCCATATCCAAGGGGATATTACAGGTGTAGCAGCTCCAAAGGCTGCTCGGCCCGAAAGCAGGTCGAGCGTAGCCGAACCGACCCCAACATGCTCGTGATCACCTACACTTCGGAGCATAACCACCCATGGCCTACTCAACGTAATGCACTAGCAGGCTCAACTCGCTCCCACCCTTCTCGAACCTCCACTTCTACCACACGTATAACAAGCCCAAAACATGAGCACAACAATGAAAACCTAGCAACTGTGACGATAAAGGAGGAGGACATGAATGAAGACCAAACGACGGAGAAAGCAACCACAACAATAACAACAAACCAACATCAGGTCGAGGGAGATCATCAGGAGTTCTTGTACGACTTGATTTTCGACGAATTCGCTGATCAAATGAACGAGCATGATCGTCATCATGCAACGGACACGATGAACGATAACCTTCTCCGGTTTAGTAATCATGGGTTTAGTAAAGGAAATGATGAAGAGCGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGACAGAGAAGTCAAATGGGAGCTTGTTCAAATAA 1170 49.57 MFCNLFEMDNDNYQQAGDLTDVIRASSAATSAAHSSEFSLGDRHLLPHLPADDSSMNFGDPLLLPTSSTRDPFLHPHFSSFNFDSHGGGWGFTAAERPSTVFPRMLQISPTSKVGDGVITTPPCDSPAVAVTGNSPTSNPLCLRDNSDLQISPPRNPALKRRKNQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTSTSTTRITSPKHEHNNENLATVTIKEEDMNEDQTTEKATTTITTNQHQVEGDHQEFLYDLIFDEFADQMNEHDRHHATDTMNDNLLRFSNHGFSKGNDEERSKDPFLELYDWTEKSNGSLFK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3605353 3607309 + CmoCh18G005080.1 Cmo18g00508 402281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00508 389 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 96 382 - -
Cmo18g00508 389 ProSiteProfiles WRKY domain profile. 184 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g00508 389 Pfam WRKY DNA -binding domain 191 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g00508 389 MobiDBLite consensus disorder prediction 246 276 - -
Cmo18g00508 389 SUPERFAMILY WRKY DNA-binding domain 187 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g00508 389 SMART WRKY_cls 189 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g00508 389 MobiDBLite consensus disorder prediction 246 278 - -
Cmo18g00508 389 MobiDBLite consensus disorder prediction 130 165 - -
Cmo18g00508 389 Gene3D WRKY domain 162 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g00508 389 MobiDBLite consensus disorder prediction 130 153 - -
Cmo18g00508 389 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 96 382 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00614 Cmo-Chr13:6701906 Cmo18g00508 Cmo-Chr18:3605353 1.03E-34 dispersed
Cmo14g02126 Cmo-Chr14:15377304 Cmo18g00508 Cmo-Chr18:3605353 1.40E-44 dispersed
Cmo16g00630 Cmo-Chr16:3100583 Cmo18g00508 Cmo-Chr18:3605353 5.66E-37 dispersed
Cmo18g00408 Cmo-Chr18:2667866 Cmo18g00508 Cmo-Chr18:3605353 5.72E-34 dispersed
Cmo18g00508 Cmo-Chr18:3605353 Cmo19g01045 Cmo-Chr19:9102316 3.05E-34 dispersed
Cmo18g00508 Cmo-Chr18:3605353 Cmo03g01464 Cmo-Chr3:10534462 3.32E-49 wgd
Cmo18g00508 Cmo-Chr18:3605353 Cmo07g00048 Cmo-Chr7:306947 1.58E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11505 PF03106 WRKY 2.00E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00508 - - csv:101220733 526.554