Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00508 | ATGTTCTGCAATTTGTTTGAGATGGACAATGATAACTATCAGCAAGCGGGGGATTTGACCGATGTAATTCGAGCTAGTTCCGCCGCCACCTCAGCTGCCCACTCATCGGAATTCTCTCTCGGCGACCGCCATCTCTTGCCTCACCTTCCCGCCGATGACTCTTCCATGAATTTTGGAGATCCCTTGTTGCTTCCCACTTCTAGTACTCGAGATCCGTTTCTTCATCCCCATTTCTCTTCCTTCAATTTTGATTCTCACGGCGGCGGTTGGGGTTTCACGGCGGCGGAACGGCCTTCTACTGTATTTCCAAGAATGTTGCAGATCTCTCCCACCTCCAAAGTTGGTGACGGTGTAATTACTACTCCTCCATGCGACTCACCGGCCGTGGCCGTAACGGGGAATTCTCCGACCTCAAACCCGCTTTGCTTAAGGGATAATTCCGACCTCCAGATCTCTCCTCCAAGAAATCCCGCCCTTAAAAGAAGGAAGAATCAAGTGAAGAAGGTGGTGTGCATTCCGGCGCCGGCGCCGGCAAACAGCCGATCAAGCAGCGGCGAAGTTGTCCCCTCCGATCTATGGGCATGGAGGAAGTACGGACAAAAACCCATCAAAGGATCTCCATATCCAAGGGGATATTACAGGTGTAGCAGCTCCAAAGGCTGCTCGGCCCGAAAGCAGGTCGAGCGTAGCCGAACCGACCCCAACATGCTCGTGATCACCTACACTTCGGAGCATAACCACCCATGGCCTACTCAACGTAATGCACTAGCAGGCTCAACTCGCTCCCACCCTTCTCGAACCTCCACTTCTACCACACGTATAACAAGCCCAAAACATGAGCACAACAATGAAAACCTAGCAACTGTGACGATAAAGGAGGAGGACATGAATGAAGACCAAACGACGGAGAAAGCAACCACAACAATAACAACAAACCAACATCAGGTCGAGGGAGATCATCAGGAGTTCTTGTACGACTTGATTTTCGACGAATTCGCTGATCAAATGAACGAGCATGATCGTCATCATGCAACGGACACGATGAACGATAACCTTCTCCGGTTTAGTAATCATGGGTTTAGTAAAGGAAATGATGAAGAGCGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGACAGAGAAGTCAAATGGGAGCTTGTTCAAATAA | 1170 | 49.57 | MFCNLFEMDNDNYQQAGDLTDVIRASSAATSAAHSSEFSLGDRHLLPHLPADDSSMNFGDPLLLPTSSTRDPFLHPHFSSFNFDSHGGGWGFTAAERPSTVFPRMLQISPTSKVGDGVITTPPCDSPAVAVTGNSPTSNPLCLRDNSDLQISPPRNPALKRRKNQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTSTSTTRITSPKHEHNNENLATVTIKEEDMNEDQTTEKATTTITTNQHQVEGDHQEFLYDLIFDEFADQMNEHDRHHATDTMNDNLLRFSNHGFSKGNDEERSKDPFLELYDWTEKSNGSLFK | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 3605353 | 3607309 | + | CmoCh18G005080.1 | Cmo18g00508 | 402281 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00508 | 389 | PANTHER | WRKY TRANSCRIPTION FACTOR 14-RELATED | 96 | 382 | - | - | |
Cmo18g00508 | 389 | ProSiteProfiles | WRKY domain profile. | 184 | 250 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00508 | 389 | Pfam | WRKY DNA -binding domain | 191 | 248 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00508 | 389 | MobiDBLite | consensus disorder prediction | 246 | 276 | - | - | |
Cmo18g00508 | 389 | SUPERFAMILY | WRKY DNA-binding domain | 187 | 250 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00508 | 389 | SMART | WRKY_cls | 189 | 249 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00508 | 389 | MobiDBLite | consensus disorder prediction | 246 | 278 | - | - | |
Cmo18g00508 | 389 | MobiDBLite | consensus disorder prediction | 130 | 165 | - | - | |
Cmo18g00508 | 389 | Gene3D | WRKY domain | 162 | 243 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00508 | 389 | MobiDBLite | consensus disorder prediction | 130 | 153 | - | - | |
Cmo18g00508 | 389 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 96 | 382 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g00614 | Cmo-Chr13:6701906 | Cmo18g00508 | Cmo-Chr18:3605353 | 1.03E-34 | dispersed | |
Cmo14g02126 | Cmo-Chr14:15377304 | Cmo18g00508 | Cmo-Chr18:3605353 | 1.40E-44 | dispersed | |
Cmo16g00630 | Cmo-Chr16:3100583 | Cmo18g00508 | Cmo-Chr18:3605353 | 5.66E-37 | dispersed | |
Cmo18g00408 | Cmo-Chr18:2667866 | Cmo18g00508 | Cmo-Chr18:3605353 | 5.72E-34 | dispersed | |
Cmo18g00508 | Cmo-Chr18:3605353 | Cmo19g01045 | Cmo-Chr19:9102316 | 3.05E-34 | dispersed | |
Cmo18g00508 | Cmo-Chr18:3605353 | Cmo03g01464 | Cmo-Chr3:10534462 | 3.32E-49 | wgd | |
Cmo18g00508 | Cmo-Chr18:3605353 | Cmo07g00048 | Cmo-Chr7:306947 | 1.58E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11505 | PF03106 | WRKY | 2.00E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00508 | - | - | csv:101220733 | 526.554 |