Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00512 ATGTTTGAATTTATTATCCCTGCTGTTCGGGATCGTTCTTCCAAGAGCAGTCATAAAAGTGTTCAGATTGTTGAGATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCTCCGCTTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGGCATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGATCTGATAAAAAATTTGGATTCAATTCTGGACCAGACTTCACACTCAAGGAATTCCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCCCGAGAGGATTTAAATTTTGATATCGAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAATACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCATTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCCGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCCAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCCGAGGCTGTGAACGTGGCACCGGTGGACTGGTTGATTCATGGTCAAAATGCTATCGAACTTTATAGTGCACAACGACATAGGACATCGCTTTCACATGATAAATTGTTAATTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGAACTCCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTAAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAAAGAGAGTGTTATGCCTGCTTCTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAGGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGACGACAGGTGTGTGCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTGAAATGGAAAACAACAATGGATCTGTAGTTAAGGTAATTGGAAATTCATCTTGGTCTCCAGAAATAATAGCTTTAATGCATTCCTTGCACCGCCAGAAAGCCATATTTCCAAAAGGTTTTAGAAGCCGAGAGAAATTCTTTAGTGTGCTTAATCCAACTAATATTGTTACCTGCACGTCAGATGTTCTTGATGATGGCCTCCTGGGACCTCTATTCAAGGTGAGCTTGGAAGAATCTCCCCGTGAAAGTGGATTGCTTTTTACAAGTGGATCATCAGTCATGGAAGAGCTTCTCAGCTTGCTTGAAGTGGTGGTCGTAAAGGTAAACAATGATAGCACTAAGATATGCCTGGAAATAACAAATATATTATTTGCACAGAGAAGACGAATGAGAGTGGCCATGGCCGCTTCGCTTTCAGCTTCTCCCTACACATGCTCCTCCAAATCCATTCTTTTGCGCAAGTTTCGCCCCAAGATCAAATTCCGAAGAAATTGCTTCAGAATTTCTGCCTCAACCTCCGTTCTTGCCGATGGATCTCCTCTTCTTCAAGCCGCCAAGCATACTGTGGATGCATACGTAAAAAGTGGAATGGTTATTGGCTTGGGGTCTGGTCAAGCTTCTGGCATGGCCATTGGGTATCTTGGCCGGTTGCTTCGAACAGGTGCTTTGAAAGATATAGTCGGGATACCCATGTCCATAACAAGTGCGAGTGAAGCTGCCAAGGCAGGAATTCCACTAGACCAGTTCAATGATAGTTCTCAAATTGATTTTTCATTTGATGATGCTGATATTATGGAAGAAGGAACACTGATTGCTGTCATTGGGCATAGGAAACCGCAAGTGGAGGATTCAATAATCCAGGAGAAGTCTATATTAAATGCTTCCAACCAGCTTGCATTCATGGTAAAAGATAGCCAATATATGGGTGGCCCCGAGGGTTCTATTCCAGTTCTAGTGAATTCTCTTAATTGGATGCAAACTGCAGAAGAAATTGATGATCTCTTTTTAGGGGATGCCGAGGTATGGAGGAGGCCATCAATTGGGCATGCGGGTCCCCTTGGGGGCGACTTCCCATTTGTCACTAGAGAAGGCCATAACATTCTGGATGTCATATTTACATCTCCAATATCAAGTCTGGCTGCAGTGGCAGAAAGTCTTGAACAGATCGATGGAATTGTAGATCATGGAGTCATTTCTAAGTTTCCTTGCACAGCAGTTATTGCATCTGAAAGTGGGCTGCAAATTGTCGATAATCTGCAGAGGAATATGGTATAG 3036 42.95 MFEFIIPAVRDRSSKSSHKSVQIVEMLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPLSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGASVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAREDLNFDIESSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLIGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLRHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMENNNGSVVKVIGNSSWSPEIIALMHSLHRQKAIFPKGFRSREKFFSVLNPTNIVTCTSDVLDDGLLGPLFKVSLEESPRESGLLFTSGSSVMEELLSLLEVVVVKVNNDSTKICLEITNILFAQRRRMRVAMAASLSASPYTCSSKSILLRKFRPKIKFRRNCFRISASTSVLADGSPLLQAAKHTVDAYVKSGMVIGLGSGQASGMAIGYLGRLLRTGALKDIVGIPMSITSASEAAKAGIPLDQFNDSSQIDFSFDDADIMEEGTLIAVIGHRKPQVEDSIIQEKSILNASNQLAFMVKDSQYMGGPEGSIPVLVNSLNWMQTAEEIDDLFLGDAEVWRRPSIGHAGPLGGDFPFVTREGHNILDVIFTSPISSLAAVAESLEQIDGIVDHGVISKFPCTAVIASESGLQIVDNLQRNMV 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3677053 3695578 - CmoCh18G005120.1 Cmo18g00512 402285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00512 1011 Pfam JmjC domain, hydroxylase 293 409 IPR003347 -
Cmo18g00512 1011 MobiDBLite consensus disorder prediction 141 160 - -
Cmo18g00512 1011 Pfam jmjN domain 53 86 IPR003349 -
Cmo18g00512 1011 MobiDBLite consensus disorder prediction 118 160 - -
Cmo18g00512 1011 MobiDBLite consensus disorder prediction 124 140 - -
Cmo18g00512 1011 Gene3D - 770 986 - -
Cmo18g00512 1011 Gene3D Cupin 37 410 - -
Cmo18g00512 1011 CDD RPI_A 771 996 IPR004788 GO:0004751|GO:0009052
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE 616 670 - -
Cmo18g00512 1011 SMART fyrn_3 608 652 IPR003888 GO:0005634
Cmo18g00512 1011 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 901 984 - -
Cmo18g00512 1011 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 814 999 IPR004788 GO:0004751|GO:0009052
Cmo18g00512 1011 Gene3D - 892 974 - -
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 595 - -
Cmo18g00512 1011 ProSiteProfiles JmjC domain profile. 260 426 IPR003347 -
Cmo18g00512 1011 SMART JmjN_1 51 92 IPR003349 -
Cmo18g00512 1011 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Cmo18g00512 1011 SUPERFAMILY NagB/RpiA/CoA transferase-like 771 858 IPR037171 -
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 12 595 - -
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 616 670 - -
Cmo18g00512 1011 SMART cupin_9 260 426 IPR003347 -
Cmo18g00512 1011 ProSiteProfiles FYR domain FYRN motif profile. 587 652 IPR003888 GO:0005634
Cmo18g00512 1011 SUPERFAMILY Clavaminate synthase-like 231 453 - -
Cmo18g00512 1011 Pfam C5HC2 zinc finger 516 567 IPR004198 -
Cmo18g00512 1011 Gene3D - 608 718 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00512 - - - cmax:111489928 1304.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00271 Cmo-Chr8:1696344 Cmo18g00512 Cmo-Chr18:3677053 7.48E-153 dispersed
Cmo18g00512 Cmo-Chr18:3677053 Cmo19g00232 Cmo-Chr19:1610482 1.80E-58 dispersed
Cmo18g00984 Cmo-Chr18:10812994 Cmo18g00512 Cmo-Chr18:3677053 3.79E-26 dispersed
Cmo15g01289 Cmo-Chr15:8818298 Cmo18g00512 Cmo-Chr18:3677053 4.44E-12 transposed
Cmo13g00490 Cmo-Chr13:5874937 Cmo18g00512 Cmo-Chr18:3677053 1.87E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g635 . . . . . . . . . Cmo18g00512 . . . . . Cpe09g00705 . . . . . . . . . . . . . . . . . . . . . Chy12g00456 . . . . . . . . . Sed08g2833 . . . Cma18g00532 . Car18g00497 . . Bhi08g00947 Tan05g2757 Cmetu12g0423 Lac10g1266 Hepe07g1655 . . . . . . . . . Lsi02g01002 Csa01g02668 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00962 CST 1 1159 JUMONJI Transcription Factor Family AT1G08620 51.1 0.0e+00 1137.5
Cmo18g00512 . 34 583 JUMONJI Transcription Factor Family AT1G08620 59.2 1.6e-187 654.4
Cmo18g00512 . 23 706 JUMONJI Transcription Factor Family AT1G30810 55.3 7.8e-215 744.6
Cmo18g00512 . 29 670 JUMONJI Transcription Factor Family AT2G34880 51.4 2.5e-189 659.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11506 PF06026 Rib_5-P_isom_A 1.60E-30 CL0246 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00512 Cmo_Chr18 FPKM 1.529342 1.659594 2.066349 2.453039 2.242532 2.264275 1.859599 4.37569 3.348861 3.889693