Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00512 ATGTTTGAATTTATTATCCCTGCTGTTCGGGATCGTTCTTCCAAGAGCAGTCATAAAAGTGTTCAGATTGTTGAGATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCTCCGCTTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGGCATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGATCTGATAAAAAATTTGGATTCAATTCTGGACCAGACTTCACACTCAAGGAATTCCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCCCGAGAGGATTTAAATTTTGATATCGAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAATACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCATTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCCGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCCAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCCGAGGCTGTGAACGTGGCACCGGTGGACTGGTTGATTCATGGTCAAAATGCTATCGAACTTTATAGTGCACAACGACATAGGACATCGCTTTCACATGATAAATTGTTAATTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGAACTCCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTAAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAAAGAGAGTGTTATGCCTGCTTCTACGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAGGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGACGACAGGTGTGTGCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTGAAATGGAAAACAACAATGGATCTGTAGTTAAGGTAATTGGAAATTCATCTTGGTCTCCAGAAATAATAGCTTTAATGCATTCCTTGCACCGCCAGAAAGCCATATTTCCAAAAGGTTTTAGAAGCCGAGAGAAATTCTTTAGTGTGCTTAATCCAACTAATATTGTTACCTGCACGTCAGATGTTCTTGATGATGGCCTCCTGGGACCTCTATTCAAGGTGAGCTTGGAAGAATCTCCCCGTGAAAGTGGATTGCTTTTTACAAGTGGATCATCAGTCATGGAAGAGCTTCTCAGCTTGCTTGAAGTGGTGGTCGTAAAGGTAAACAATGATAGCACTAAGATATGCCTGGAAATAACAAATATATTATTTGCACAGAGAAGACGAATGAGAGTGGCCATGGCCGCTTCGCTTTCAGCTTCTCCCTACACATGCTCCTCCAAATCCATTCTTTTGCGCAAGTTTCGCCCCAAGATCAAATTCCGAAGAAATTGCTTCAGAATTTCTGCCTCAACCTCCGTTCTTGCCGATGGATCTCCTCTTCTTCAAGCCGCCAAGCATACTGTGGATGCATACGTAAAAAGTGGAATGGTTATTGGCTTGGGGTCTGGTCAAGCTTCTGGCATGGCCATTGGGTATCTTGGCCGGTTGCTTCGAACAGGTGCTTTGAAAGATATAGTCGGGATACCCATGTCCATAACAAGTGCGAGTGAAGCTGCCAAGGCAGGAATTCCACTAGACCAGTTCAATGATAGTTCTCAAATTGATTTTTCATTTGATGATGCTGATATTATGGAAGAAGGAACACTGATTGCTGTCATTGGGCATAGGAAACCGCAAGTGGAGGATTCAATAATCCAGGAGAAGTCTATATTAAATGCTTCCAACCAGCTTGCATTCATGGTAAAAGATAGCCAATATATGGGTGGCCCCGAGGGTTCTATTCCAGTTCTAGTGAATTCTCTTAATTGGATGCAAACTGCAGAAGAAATTGATGATCTCTTTTTAGGGGATGCCGAGGTATGGAGGAGGCCATCAATTGGGCATGCGGGTCCCCTTGGGGGCGACTTCCCATTTGTCACTAGAGAAGGCCATAACATTCTGGATGTCATATTTACATCTCCAATATCAAGTCTGGCTGCAGTGGCAGAAAGTCTTGAACAGATCGATGGAATTGTAGATCATGGAGTCATTTCTAAGTTTCCTTGCACAGCAGTTATTGCATCTGAAAGTGGGCTGCAAATTGTCGATAATCTGCAGAGGAATATGGTATAG 3036 42.95 MFEFIIPAVRDRSSKSSHKSVQIVEMLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPLSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGASVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAREDLNFDIESSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLIGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLRHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMENNNGSVVKVIGNSSWSPEIIALMHSLHRQKAIFPKGFRSREKFFSVLNPTNIVTCTSDVLDDGLLGPLFKVSLEESPRESGLLFTSGSSVMEELLSLLEVVVVKVNNDSTKICLEITNILFAQRRRMRVAMAASLSASPYTCSSKSILLRKFRPKIKFRRNCFRISASTSVLADGSPLLQAAKHTVDAYVKSGMVIGLGSGQASGMAIGYLGRLLRTGALKDIVGIPMSITSASEAAKAGIPLDQFNDSSQIDFSFDDADIMEEGTLIAVIGHRKPQVEDSIIQEKSILNASNQLAFMVKDSQYMGGPEGSIPVLVNSLNWMQTAEEIDDLFLGDAEVWRRPSIGHAGPLGGDFPFVTREGHNILDVIFTSPISSLAAVAESLEQIDGIVDHGVISKFPCTAVIASESGLQIVDNLQRNMV 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3677053 3695578 - CmoCh18G005120.1 Cmo18g00512 402285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00512 1011 Pfam JmjC domain, hydroxylase 293 409 IPR003347 -
Cmo18g00512 1011 MobiDBLite consensus disorder prediction 141 160 - -
Cmo18g00512 1011 Pfam jmjN domain 53 86 IPR003349 -
Cmo18g00512 1011 MobiDBLite consensus disorder prediction 118 160 - -
Cmo18g00512 1011 MobiDBLite consensus disorder prediction 124 140 - -
Cmo18g00512 1011 Gene3D - 770 986 - -
Cmo18g00512 1011 Gene3D Cupin 37 410 - -
Cmo18g00512 1011 CDD RPI_A 771 996 IPR004788 GO:0004751|GO:0009052
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE 616 670 - -
Cmo18g00512 1011 SMART fyrn_3 608 652 IPR003888 GO:0005634
Cmo18g00512 1011 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 901 984 - -
Cmo18g00512 1011 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 814 999 IPR004788 GO:0004751|GO:0009052
Cmo18g00512 1011 Gene3D - 892 974 - -
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 595 - -
Cmo18g00512 1011 ProSiteProfiles JmjC domain profile. 260 426 IPR003347 -
Cmo18g00512 1011 SMART JmjN_1 51 92 IPR003349 -
Cmo18g00512 1011 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Cmo18g00512 1011 SUPERFAMILY NagB/RpiA/CoA transferase-like 771 858 IPR037171 -
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 12 595 - -
Cmo18g00512 1011 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 616 670 - -
Cmo18g00512 1011 SMART cupin_9 260 426 IPR003347 -
Cmo18g00512 1011 ProSiteProfiles FYR domain FYRN motif profile. 587 652 IPR003888 GO:0005634
Cmo18g00512 1011 SUPERFAMILY Clavaminate synthase-like 231 453 - -
Cmo18g00512 1011 Pfam C5HC2 zinc finger 516 567 IPR004198 -
Cmo18g00512 1011 Gene3D - 608 718 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00271 Cmo-Chr8:1696344 Cmo18g00512 Cmo-Chr18:3677053 7.48E-153 dispersed
Cmo18g00512 Cmo-Chr18:3677053 Cmo19g00232 Cmo-Chr19:1610482 1.80E-58 dispersed
Cmo18g00984 Cmo-Chr18:10812994 Cmo18g00512 Cmo-Chr18:3677053 3.79E-26 dispersed
Cmo15g01289 Cmo-Chr15:8818298 Cmo18g00512 Cmo-Chr18:3677053 4.44E-12 transposed
Cmo13g00490 Cmo-Chr13:5874937 Cmo18g00512 Cmo-Chr18:3677053 1.87E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11506 PF06026 Rib_5-P_isom_A 1.60E-30 CL0246 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00512 - - cmax:111489928 1304.27