Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00524 ATGGCATCCACTTCACTTTTCAAGTTCTTCTCCATCTCCTTCTTTCTCTTTTGTCTTCTCACAACCCAAGCTGCTTCACAATCTAATGAATGTGAAACAACAACCAATGCATGCACCAATAAAGAAAAGGCGTTACGACTCAAAATCATCGCCATTTTCTCGATCCTCATTGCGAGTGTGATCGGCGTTTGTTTACCGCTCTTCACTCGATCGATCCCGTCGTTGCACCCTGATAGAAACATGTTCATCATCCTCAAAGCCTTCGCGGCTGGCATCATTCTCGCCACCGGTTTTATGCATGTTCTACCTGATTCTTTCGATATGCTTTGGTCGAATTGTTTGAAAGAGAATCCATGGCATAAGTTTCCCTTCTCGGGTTTCGTTGCCATGATGTCGGCGATCCTCACGCTCATGGTCGATTCCATGGCTACGAGTTTGTATACCAAGAAACATACCGAGGTTATGCCTGAAAATTCTCAAGGAGGAGATCAAGAATTGCCCGTAATTATTACTAGTAACAACAAAGAAATTAGTTTTGGTTCTCAACTATTACGTTACCGAGTGATTGCCATGGTTTTGGAATTGGGAATCGTGGTTCACTCGGTTGTGATTGGTCTATCACTTGGAGCCACAAACGACACATGCACAATCAAGGGCCTAGTGGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGCTGCATTCTTCAGGCAGAATATAAATGGATGAAGAAGGCAATAATGGCATTTTTCTTCTCGGTGACAACCCCATTTGGGATAGCCCTAGGAATAGGGTTGTCAAAGACATACAAAGAAAACAGCCCTAGTGCCCTAATCACTGTGGGGTTACTCAATGCTTCTTCAGCTGGCCTCCTCATCTACATGGCTTTAGTGGATCTTCTTTCAGCTGACTTTATGGGCCCAAAGTTGCAGGGCAGCATCAAACTTCAAGTCAAATCCTATATTGCCGTTCTCTTAGGAGCTGGTGGCATGTCTTTAATGGCGAAGTGGGCTTGA 1029 44.41 MASTSLFKFFSISFFLFCLLTTQAASQSNECETTTNACTNKEKALRLKIIAIFSILIASVIGVCLPLFTRSIPSLHPDRNMFIILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPFSGFVAMMSAILTLMVDSMATSLYTKKHTEVMPENSQGGDQELPVIITSNNKEISFGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMAFFFSVTTPFGIALGIGLSKTYKENSPSALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYIAVLLGAGGMSLMAKWA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3822705 3825235 - CmoCh18G005240.1 Cmo18g00524 402297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00524 342 Pfam ZIP Zinc transporter 180 339 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo18g00524 342 Pfam ZIP Zinc transporter 46 176 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo18g00524 342 PANTHER ZINC/IRON TRANSPORTER 13 342 - -
Cmo18g00524 342 TIGRFAM zip: ZIP zinc/iron transport family 34 342 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cmo18g00524 342 PANTHER ZINC TRANSPORTER 10-RELATED 13 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02069 Cmo-Chr11:13998282 Cmo18g00524 Cmo-Chr18:3822705 2.57E-113 dispersed
Cmo18g00524 Cmo-Chr18:3822705 Cmo19g01145 Cmo-Chr19:9642448 1.10E-107 dispersed
Cmo02g00740 Cmo-Chr2:4643219 Cmo18g00524 Cmo-Chr18:3822705 7.09E-81 transposed
Cmo03g01273 Cmo-Chr3:9694855 Cmo18g00524 Cmo-Chr18:3822705 3.64E-139 transposed
Cmo09g01001 Cmo-Chr9:5321822 Cmo18g00524 Cmo-Chr18:3822705 9.14E-11 transposed
Cmo13g00470 Cmo-Chr13:5758732 Cmo18g00524 Cmo-Chr18:3822705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00524 K14709 - csv:101221552 561.607