Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00528 ATGGCGCAGAAATCTCTGATCTACACTTTTGTCTCTCGCGGAACCGTGATTCTCGCTGAGTACACCGAGTATAGTGGGAATTTCAATTCCATTGCTTTTCAATGCCTCCAGAAATTGCCCTCTGCTAATAACAAATTCACCTACAATTGCGATGGCCACACCTTCAATTATCTCGTCGACAACGGTTACACATACTGTGTCGTTGCAACTGAATCAGCTGGAAGACAAGTGCCAATTGCATTTTTGGAGCGTATTAAGGATGATTTCGTGTCGAAGTATGGTGGGGGAAAGGCTGCCACAGCTCCTGCCAATAGTCTTAACAAGGAATTTAGGTCAAAGCTGAAGGAACATATGCAGTACTGTGTTGATAATCCTGAAGAGATCAGCAAGCTTGCAAAGGTGAAGGCTCAAGTTTCAGAAGTGAAAGGTGTTATGATGGAAAATATTGAAAAGGTTCTTGACAGAGGAGAGAAGATAGAACTTCTAGTGGATAAGACCGAAAACCTTCATAACCAGGCACAAGACTTCAAGACGAGTGGAACGAAAATTCGAAGGAAAATGTGGCTACAAAATATGAAGATCAAGTTGATCGTTTTGGGGATTTTGATAGCTTTGATCCTTATCATAGTGCTTTCAGTTTGCCATGGCTTCAACTGTGGTGGAAAATGA 669 42.0 MAQKSLIYTFVSRGTVILAEYTEYSGNFNSIAFQCLQKLPSANNKFTYNCDGHTFNYLVDNGYTYCVVATESAGRQVPIAFLERIKDDFVSKYGGGKAATAPANSLNKEFRSKLKEHMQYCVDNPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHNQAQDFKTSGTKIRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCGGK 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3870046 3878875 - CmoCh18G005280.1 Cmo18g00528 402301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00528 222 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Cmo18g00528 222 Gene3D Longin domain 1 127 - -
Cmo18g00528 222 CDD Longin 7 121 IPR010908 -
Cmo18g00528 222 SMART Longin_2 31 113 IPR010908 -
Cmo18g00528 222 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Cmo18g00528 222 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Cmo18g00528 222 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Cmo18g00528 222 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 170 - -
Cmo18g00528 222 Pfam Synaptobrevin 129 215 IPR042855 -
Cmo18g00528 222 Gene3D - 128 214 - -
Cmo18g00528 222 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
Cmo18g00528 222 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Cmo18g00528 222 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Cmo18g00528 222 CDD R-SNARE 130 188 - -
Cmo18g00528 222 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Cmo18g00528 222 SUPERFAMILY SNARE fusion complex 124 192 - -
Cmo18g00528 222 PANTHER SNARE PROTEINS 1 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01732 Cmo-Chr2:9876754 Cmo18g00528 Cmo-Chr18:3870046 1.29E-126 dispersed
Cmo04g03137 Cmo-Chr4:21739806 Cmo18g00528 Cmo-Chr18:3870046 6.08E-09 dispersed
Cmo06g01268 Cmo-Chr6:9569193 Cmo18g00528 Cmo-Chr18:3870046 5.38E-128 dispersed
Cmo08g01003 Cmo-Chr8:6515978 Cmo18g00528 Cmo-Chr18:3870046 4.61E-109 dispersed
Cmo14g01930 Cmo-Chr14:14308522 Cmo18g00528 Cmo-Chr18:3870046 1.05E-125 dispersed
Cmo17g00116 Cmo-Chr17:623422 Cmo18g00528 Cmo-Chr18:3870046 4.83E-94 dispersed
Cmo17g00309 Cmo-Chr17:1873593 Cmo18g00528 Cmo-Chr18:3870046 2.16E-97 dispersed
Cmo18g00528 Cmo-Chr18:3870046 Cmo19g00165 Cmo-Chr19:1041365 6.47E-119 dispersed
Cmo20g00176 Cmo-Chr20:882178 Cmo18g00528 Cmo-Chr18:3870046 9.54E-45 dispersed
Cmo13g00468 Cmo-Chr13:5731446 Cmo18g00528 Cmo-Chr18:3870046 1.47E-30 transposed
Cmo13g00467 Cmo-Chr13:5719835 Cmo18g00528 Cmo-Chr18:3870046 1.65E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00528 K08511 - csv:101221779 404.831