Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00531 ATGGAGAACAGTTTTGCAGAACTAAAACAAGTAAATTGGCTAGAAGTAACTGGTTCAACATCGGAAAAAGTTGAGGTTGGGAAATGGTTCAAAGTGAGTTTCAATGTGACACTACGACCCAATGCTTTTGGATGGGATGAGTCTAATATTTACATAATGGCTAAGATTGGGAAAAAGGGGCGTTTCAGTTTCAAGAAACTGAATCTTCGTAATAAAAATCCAGACGAAAGATTTAACATTCCCCAGAATGAATTAAAAATTGAAGTTGCCAAATCCGCTGAGGATCCCATTCTCTACTTTGGTATGTATGAAGTTTGGAGCAACAGATGGAAAGGAGGGTTGAGGATCCATCATGCACTCGTTGAGGAGTGCGAGGCACCAAAAGAGAAAAAATTGCTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCTTCAACAATAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATGGTTACTTGAGACGGACGGAACTCCGGAACCTTTAGAGAATGGGTGA 1377 38.63 MENSFAELKQVNWLEVTGSTSEKVEVGKWFKVSFNVTLRPNAFGWDESNIYIMAKIGKKGRFSFKKLNLRNKNPDERFNIPQNELKIEVAKSAEDPILYFGMYEVWSNRWKGGLRIHHALVEECEAPKEKKLLNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIQCILIFGLILLLMIDSTSDQKDIPWLYFISSTIMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIWLLETDGTPEPLENG 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3940098 3951077 + CmoCh18G005310.1 Cmo18g00531 402304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00531 458 Pfam Ribosomal protein S7p/S5e 128 246 IPR023798 -
Cmo18g00531 458 Gene3D Ribosomal protein S7 domain 109 247 IPR036823 -
Cmo18g00531 458 PANTHER - 245 445 - -
Cmo18g00531 458 TIGRFAM rpsG_bact: ribosomal protein uS7 129 246 IPR005717 GO:0003735|GO:0006412|GO:0015935
Cmo18g00531 458 Pfam Phloem protein 2 4 118 IPR025886 -
Cmo18g00531 458 Pfam Proton-conducting membrane transporter 355 446 IPR001750 -
Cmo18g00531 458 PANTHER - 245 445 - -
Cmo18g00531 458 Pfam NAD(P)H-quinone oxidoreductase subunit 2 N-terminal 246 326 IPR045693 -
Cmo18g00531 458 CDD uS7_Chloroplast 129 246 - -
Cmo18g00531 458 SUPERFAMILY Ribosomal protein S7 129 246 IPR036823 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00531 K05573 ndhB; NAD(P)H-quinone oxidoreductase subunit 2 [EC:7.1.1.2] - twl:119993131 571.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00959 Cmo-Chr1:5987377 Cmo18g00531 Cmo-Chr18:3940098 8.10E-76 dispersed
Cmo03g00495 Cmo-Chr3:5260669 Cmo18g00531 Cmo-Chr18:3940098 3.01E-08 dispersed
Cmo12g00793 Cmo-Chr12:6638112 Cmo18g00531 Cmo-Chr18:3940098 1.41E-17 dispersed
Cmo13g00290 Cmo-Chr13:2642697 Cmo18g00531 Cmo-Chr18:3940098 5.07E-10 dispersed
Cmo13g00291 Cmo-Chr13:2820937 Cmo18g00531 Cmo-Chr18:3940098 1.56E-60 dispersed
Cmo15g01039 Cmo-Chr15:6563441 Cmo18g00531 Cmo-Chr18:3940098 8.71E-09 dispersed
Cmo18g00531 Cmo-Chr18:3940098 Cmo18g00720 Cmo-Chr18:8999547 4.48E-40 dispersed
Cmo18g00531 Cmo-Chr18:3940098 Cmo18g00533 Cmo-Chr18:3978826 6.04E-38 proximal
Cmo18g00530 Cmo-Chr18:3920590 Cmo18g00531 Cmo-Chr18:3940098 1.12E-28 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g155 . . . . . . . . . Cmo18g00531 . Cma18g00555 . . . Cpe09g00684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00916 Cam01g0946 Cec01g0939 Cco01g0983 Clacu01g0946 Cmu01g0901 Cre01g0838 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002829 6 1 1 2 4 2 0 5 0 0 0 0 5 1 1 3 2 0 0 1 0 0 0 0 2 2 2 3 0 0 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00531 Cmo_Chr18 FPKM 1.093201 1.679697 0.0 0.0 1.019642 1.173736 0.944865 0.0 0.089774 0.0