Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00531 | ATGGAGAACAGTTTTGCAGAACTAAAACAAGTAAATTGGCTAGAAGTAACTGGTTCAACATCGGAAAAAGTTGAGGTTGGGAAATGGTTCAAAGTGAGTTTCAATGTGACACTACGACCCAATGCTTTTGGATGGGATGAGTCTAATATTTACATAATGGCTAAGATTGGGAAAAAGGGGCGTTTCAGTTTCAAGAAACTGAATCTTCGTAATAAAAATCCAGACGAAAGATTTAACATTCCCCAGAATGAATTAAAAATTGAAGTTGCCAAATCCGCTGAGGATCCCATTCTCTACTTTGGTATGTATGAAGTTTGGAGCAACAGATGGAAAGGAGGGTTGAGGATCCATCATGCACTCGTTGAGGAGTGCGAGGCACCAAAAGAGAAAAAATTGCTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCTTCAACAATAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATGGTTACTTGAGACGGACGGAACTCCGGAACCTTTAGAGAATGGGTGA | 1377 | 38.63 | MENSFAELKQVNWLEVTGSTSEKVEVGKWFKVSFNVTLRPNAFGWDESNIYIMAKIGKKGRFSFKKLNLRNKNPDERFNIPQNELKIEVAKSAEDPILYFGMYEVWSNRWKGGLRIHHALVEECEAPKEKKLLNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIQCILIFGLILLLMIDSTSDQKDIPWLYFISSTIMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIWLLETDGTPEPLENG | 458 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 3940098 | 3951077 | + | CmoCh18G005310.1 | Cmo18g00531 | 402304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00531 | 458 | Pfam | Ribosomal protein S7p/S5e | 128 | 246 | IPR023798 | - | |
| Cmo18g00531 | 458 | Gene3D | Ribosomal protein S7 domain | 109 | 247 | IPR036823 | - | |
| Cmo18g00531 | 458 | PANTHER | - | 245 | 445 | - | - | |
| Cmo18g00531 | 458 | TIGRFAM | rpsG_bact: ribosomal protein uS7 | 129 | 246 | IPR005717 | GO:0003735|GO:0006412|GO:0015935 | |
| Cmo18g00531 | 458 | Pfam | Phloem protein 2 | 4 | 118 | IPR025886 | - | |
| Cmo18g00531 | 458 | Pfam | Proton-conducting membrane transporter | 355 | 446 | IPR001750 | - | |
| Cmo18g00531 | 458 | PANTHER | - | 245 | 445 | - | - | |
| Cmo18g00531 | 458 | Pfam | NAD(P)H-quinone oxidoreductase subunit 2 N-terminal | 246 | 326 | IPR045693 | - | |
| Cmo18g00531 | 458 | CDD | uS7_Chloroplast | 129 | 246 | - | - | |
| Cmo18g00531 | 458 | SUPERFAMILY | Ribosomal protein S7 | 129 | 246 | IPR036823 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g00959 | Cmo-Chr1:5987377 | Cmo18g00531 | Cmo-Chr18:3940098 | 8.10E-76 | dispersed | |
| Cmo03g00495 | Cmo-Chr3:5260669 | Cmo18g00531 | Cmo-Chr18:3940098 | 3.01E-08 | dispersed | |
| Cmo12g00793 | Cmo-Chr12:6638112 | Cmo18g00531 | Cmo-Chr18:3940098 | 1.41E-17 | dispersed | |
| Cmo13g00290 | Cmo-Chr13:2642697 | Cmo18g00531 | Cmo-Chr18:3940098 | 5.07E-10 | dispersed | |
| Cmo13g00291 | Cmo-Chr13:2820937 | Cmo18g00531 | Cmo-Chr18:3940098 | 1.56E-60 | dispersed | |
| Cmo15g01039 | Cmo-Chr15:6563441 | Cmo18g00531 | Cmo-Chr18:3940098 | 8.71E-09 | dispersed | |
| Cmo18g00531 | Cmo-Chr18:3940098 | Cmo18g00720 | Cmo-Chr18:8999547 | 4.48E-40 | dispersed | |
| Cmo18g00531 | Cmo-Chr18:3940098 | Cmo18g00533 | Cmo-Chr18:3978826 | 6.04E-38 | proximal | |
| Cmo18g00530 | Cmo-Chr18:3920590 | Cmo18g00531 | Cmo-Chr18:3940098 | 1.12E-28 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00531 | K05573 | - | twl:119993131 | 571.622 |