Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00533 ATGGTTGGATTTTTCTATTCATCACCTCACCACAAAGGAGATCAAAAGGCTATAGAAAAAATTAAGAACAAAAAGACCATAATTTATCCAAAAGGCTTAGACATCACATGGGGCAAGGACGACCGATACTGGCGCTTGCCTAGCCAATACCGAAACATGAAGGACCCGAGCGCAGCTGCAGAGCTGCTGCAAGTGTCGTGGCTCGAGGTGACGTGCTCGACCGACAATGTCGAGGCTGGAAAAAGCTATAGAGTTGGCTTCAACGTATCGATGGCACCAGCGGCTTTTGGATGGAAAGGGTGTGACGTTTACATTATGGCTAAGATTGGGAAGGCAGGGAGATTTGTGTACAAAAAGATGTCGCTAGAGAACAAATGTTCTGTTCCAAATAAGTTTAGTATGCCGGAGGAGGGTCTTATTATCACTGTGAAACCTCCACCAAGCTCACTAGGAGACCATTGTCTGTACTTCGGAATGTACGAGGTTTGGAGTGGGCGGTGGAAGGGTGGACTCAAGATCCACCACGCATTTGTTGAGCAGATTAACCTCCCGTCTCCATCAACTTGA 567 46.91 MVGFFYSSPHHKGDQKAIEKIKNKKTIIYPKGLDITWGKDDRYWRLPSQYRNMKDPSAAAELLQVSWLEVTCSTDNVEAGKSYRVGFNVSMAPAAFGWKGCDVYIMAKIGKAGRFVYKKMSLENKCSVPNKFSMPEEGLIITVKPPPSSLGDHCLYFGMYEVWSGRWKGGLKIHHAFVEQINLPSPST 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3978826 3979523 + CmoCh18G005330.1 Cmo18g00533 402306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00533 188 PANTHER - 11 178 - -
Cmo18g00533 188 Pfam Phloem protein 2 24 176 IPR025886 -
Cmo18g00533 188 PANTHER PROTEIN PHLOEM PROTEIN 2-LIKE A9 11 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00533 - - - cpep:111802632 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00462 Cmo-Chr13:5671721 Cmo18g00533 Cmo-Chr18:3978826 1.01E-94 dispersed
Cmo18g00529 Cmo-Chr18:3902413 Cmo18g00533 Cmo-Chr18:3978826 4.25E-58 dispersed
Cmo18g00530 Cmo-Chr18:3920590 Cmo18g00533 Cmo-Chr18:3978826 9.42E-44 dispersed
Cmo18g00533 Cmo-Chr18:3978826 Cmo13g00461 Cmo-Chr13:5668078 9.80E-07 dispersed
Cmo18g00531 Cmo-Chr18:3940098 Cmo18g00533 Cmo-Chr18:3978826 6.04E-38 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g154 Blo01g00907 . . . . . . . . Cmo18g00533 . Cma18g00552 . Car18g00991 . Cpe09g00687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00922 Cam01g0950 Cec01g0953 Cco01g0991 Clacu01g0951 Cmu01g0908 Cre01g0841 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000268 1 5 1 1 1 6 6 6 6 4 6 6 4 4 6 4 6 2 6 6 5 5 5 7 10 5 4 9 8 3 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00533 Cmo_Chr18 FPKM 1.815972 2.106291 2.571272 3.062196 3.383762 2.846669 3.571887 3.088504 3.433188 3.235507