Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00533 | ATGGTTGGATTTTTCTATTCATCACCTCACCACAAAGGAGATCAAAAGGCTATAGAAAAAATTAAGAACAAAAAGACCATAATTTATCCAAAAGGCTTAGACATCACATGGGGCAAGGACGACCGATACTGGCGCTTGCCTAGCCAATACCGAAACATGAAGGACCCGAGCGCAGCTGCAGAGCTGCTGCAAGTGTCGTGGCTCGAGGTGACGTGCTCGACCGACAATGTCGAGGCTGGAAAAAGCTATAGAGTTGGCTTCAACGTATCGATGGCACCAGCGGCTTTTGGATGGAAAGGGTGTGACGTTTACATTATGGCTAAGATTGGGAAGGCAGGGAGATTTGTGTACAAAAAGATGTCGCTAGAGAACAAATGTTCTGTTCCAAATAAGTTTAGTATGCCGGAGGAGGGTCTTATTATCACTGTGAAACCTCCACCAAGCTCACTAGGAGACCATTGTCTGTACTTCGGAATGTACGAGGTTTGGAGTGGGCGGTGGAAGGGTGGACTCAAGATCCACCACGCATTTGTTGAGCAGATTAACCTCCCGTCTCCATCAACTTGA | 567 | 46.91 | MVGFFYSSPHHKGDQKAIEKIKNKKTIIYPKGLDITWGKDDRYWRLPSQYRNMKDPSAAAELLQVSWLEVTCSTDNVEAGKSYRVGFNVSMAPAAFGWKGCDVYIMAKIGKAGRFVYKKMSLENKCSVPNKFSMPEEGLIITVKPPPSSLGDHCLYFGMYEVWSGRWKGGLKIHHAFVEQINLPSPST | 188 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 3978826 | 3979523 | + | CmoCh18G005330.1 | Cmo18g00533 | 402306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00533 | 188 | PANTHER | - | 11 | 178 | - | - | |
| Cmo18g00533 | 188 | Pfam | Phloem protein 2 | 24 | 176 | IPR025886 | - | |
| Cmo18g00533 | 188 | PANTHER | PROTEIN PHLOEM PROTEIN 2-LIKE A9 | 11 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo13g00462 | Cmo-Chr13:5671721 | Cmo18g00533 | Cmo-Chr18:3978826 | 1.01E-94 | dispersed | |
| Cmo18g00529 | Cmo-Chr18:3902413 | Cmo18g00533 | Cmo-Chr18:3978826 | 4.25E-58 | dispersed | |
| Cmo18g00530 | Cmo-Chr18:3920590 | Cmo18g00533 | Cmo-Chr18:3978826 | 9.42E-44 | dispersed | |
| Cmo18g00533 | Cmo-Chr18:3978826 | Cmo13g00461 | Cmo-Chr13:5668078 | 9.80E-07 | dispersed | |
| Cmo18g00531 | Cmo-Chr18:3940098 | Cmo18g00533 | Cmo-Chr18:3978826 | 6.04E-38 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00533 | - | - | cpep:111802632 | 363.614 |