Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00534 ATGGCTGTGCTCTTGGAGGAGATAGTGAAGTCGGTGGAGTTGTGGTTGAAGCTGATCAAGAAGCCCGAGACGTACGTCGATCCGAATCTCGATCCTGTTCTTTTGGTTCCGGGAGTTGCTGGTTCGATCTTGAACGCGGTTCATGAGGATACGGGCAAAGAGGAGCGAGTTTGGGTCAGGATATTAGGGGCTGATGCTAAATTCCGAACCGACCTCTGGTCTTTTTACGATCCTTCTTCTGGTGAGACTGTATGTTTTGATCCAAAGGTCAAAATCAAAGTTCCTGATGAGAGAAACGGATTGTATGCAATCGATACGTTGGACCCTGACATGATCATTGGATGCGATTCTGTTTACTATTTCCATGACATGATTGTCGAAATGACCAAGTGGGGTTTTCAAGAAGGAAAAACGCTTTTTGGGTTCGGATATGATTTTCGTCAAAGTAACAGGTTGCCAGAAACGTTGGATCTCTTAGCTGCGAAACTGGAAGCAGTATATAATGCTTCAGGAGGGAAAAAGATTAATCTTATTAGTCATTCAATGGGCGGTCTTTTAGTGAAATGCTTCATGAGCCTGCGCAGCGACATTTTTGAGAAGTATGTGCAGAATTGGATTGCAATTGCTGCTCCATTCCAGGGTGCACCTGGATATGTTACATCTACCTTTGTGAGTGGAATGTCATTCGTTAATGGATGGAGAGAGAACTTCTTCATATCAAAGTGGAGCATGCACCAACTGCTTATTGAGTGCCCATCCATTTATGAACTAATGGGCTCTCCGGACTTTGATTGGCAACACATTCCTCTACTCGAAGTCTGGAGAGAGAAACTTGACGCGGATGGAAACGCTCACAAGATGTTGGAATCGTACTCGCTTAAAGAAAGTGTCGAAATACTGACAGAATCTCTTTCGACAAACATGATTCTTCATGATGGAATGGATATTCCTCTGCCATTTAATTTGGAGATCTTGAAATGGGCGAACGAGACGAGGGAAATTCTAAAGAACGCTAAACTACCTCCTCAGGTCAAGTTTTACAATATATATGCAACAGGTCTCGAGACGCCGCATACCGTTTGCTATGGAGATGCAGAAAATCCTGTTGCTGATTTACAAAAACTGCGATACATTGAGCCGAAGTATGTTTACGTCGATGGTGATGGGACAGTTCCCGTGGAATCGGCAATGGCCGATGGACTTGATGCAGTAGCGAGGATTGGGGTCCCTGGTGAGCACCAGCGCGTTCTTAGAGACCACCGCTTATTCAGAAGCCTCAAGCATTGGCTCAAAGCAGGTGATCCCGACCCATTCTACGACCCACTGAACGACTATGTGATCTTGCCAACTGCTTTCGAGGTCGAAAGCCATGTGGACAAGGGTCTGCAAGTAGCTGCTCTAAAAGAGGAATGGGAGATCATCTCCAACGACCAAAATAAACCAGATGAGTTGTGTAATGGGAAGCCATTGGTGAGTTCCATAATGCTATCTCGAGTTGTCGGGGACTGTCCATCCTCGAGGGCTGAGGCTTGCGCAACCGTTATCGTTCATCCCCAGAAAGAGGGTAAGCAGCACGTTGAGCTGAATGCTCTTAGCGTATCAGTCGATGCATGA 1614 45.85 MAVLLEEIVKSVELWLKLIKKPETYVDPNLDPVLLVPGVAGSILNAVHEDTGKEERVWVRILGADAKFRTDLWSFYDPSSGETVCFDPKVKIKVPDERNGLYAIDTLDPDMIIGCDSVYYFHDMIVEMTKWGFQEGKTLFGFGYDFRQSNRLPETLDLLAAKLEAVYNASGGKKINLISHSMGGLLVKCFMSLRSDIFEKYVQNWIAIAAPFQGAPGYVTSTFVSGMSFVNGWRENFFISKWSMHQLLIECPSIYELMGSPDFDWQHIPLLEVWREKLDADGNAHKMLESYSLKESVEILTESLSTNMILHDGMDIPLPFNLEILKWANETREILKNAKLPPQVKFYNIYATGLETPHTVCYGDAENPVADLQKLRYIEPKYVYVDGDGTVPVESAMADGLDAVARIGVPGEHQRVLRDHRLFRSLKHWLKAGDPDPFYDPLNDYVILPTAFEVESHVDKGLQVAALKEEWEIISNDQNKPDELCNGKPLVSSIMLSRVVGDCPSSRAEACATVIVHPQKEGKQHVELNALSVSVDA 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3988272 3995326 - CmoCh18G005340.1 Cmo18g00534 402307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00534 537 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-LIKE 4 1 492 - -
Cmo18g00534 537 Gene3D alpha/beta hydrolase 80 375 IPR029058 -
Cmo18g00534 537 Pfam Lecithin:cholesterol acyltransferase 85 396 IPR003386 GO:0006629|GO:0008374
Cmo18g00534 537 SUPERFAMILY alpha/beta-Hydrolases 28 447 IPR029058 -
Cmo18g00534 537 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 1 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00534 K22389 LCAT3; phospholipase A1 [EC:3.1.1.32] - csv:101219898 1020.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00838 Cmo-Chr5:5247456 Cmo18g00534 Cmo-Chr18:3988272 1.40E-98 dispersed
Cmo05g00840 Cmo-Chr5:5261038 Cmo18g00534 Cmo-Chr18:3988272 1.08E-09 dispersed
Cmo09g00291 Cmo-Chr9:1286159 Cmo18g00534 Cmo-Chr18:3988272 2.83E-07 dispersed
Cmo18g00534 Cmo-Chr18:3988272 Cmo08g00756 Cmo-Chr8:4776495 5.73E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g162 . . . . . . . . . Cmo18g00534 . Cma18g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010940 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00534 Cmo_Chr18 FPKM 1.649054 1.904982 4.581223 4.814574 4.599532 4.57442 5.046446 6.392446 5.687892 6.500632