Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00536 ATGGCACGATCTGCCCTAGATGAAATGTCTACAACTGGCGCTTTTGTAAGAACAGCTTCGACATTTCGCAATTTGATTTCACGAGATCAATCTTCCCAATTTCCAGCAGAATCAGGGAGATATCATCTTTACATTTCATATGCTTGTCCTTGGGCTTCCAGATGCCTTGCATATTTGAAGATCAAAGGACTCGAAAAGGCGATCAGTTTCTCGTCAGTCAAACCAATTTGGGAAAGAACCAAGGACACTGATGATCATAGGGGATGGGTTTTTCCTGGTTCTGATGCAGAGGAGCCTGGGGCTGAACCTGACCATTTGAATGGAGCTAAAAGTGTAAGAGATCTGTATGAACGTGCTAGTTCAAATTACACTGGAAAGTACACAGTTCCTGTTCTATGGGACAAGAAACTGAAAACCATTGTTAACAATGAGAGCTCAGAGATAATTCGTATGCTTAATACTGAATTCAATGATATAGCAGAGAATCCAGCTCTAGATCTGTATCCTTCTCACTTGCAAGCCCAAATTGACGAGACTAATGGATGGATATACGATGCCATTAACAATGGTGTCTATAAGTGTGGTTTTGCAAGGATGCAACAGCCTTATGACCAGGTAAGCAATTCAGCTGTGAAAGAGTTGTATGAAGCTCTGGACAGATGTGAGGACATACTTTCCAAGCAACGTTACCTCTGTGGGAACACACTGTCCGAAGCAGATGTTCGGCTGTTTGTCACCATCATAAGATTCGACGAGGTTTATGCAGTTCACTTCAAATGTAATAAGAAACTGCTACGAGAGTATCCAAATCTGTTCAATTACACCAAGGATATATACCAAACTAAAGGGGTAAGCAGCTCTGTTCATATGGAACACATAAAGAAGCATTATTATGGAAGCCATCCTCAAATCAATCCATTTGGCATCATTCCTCTTGGCCCCAATATTGATTATACTTCTCCTCATGATAGGCATAGATTTTCCTCATAG 990 41.11 MARSALDEMSTTGAFVRTASTFRNLISRDQSSQFPAESGRYHLYISYACPWASRCLAYLKIKGLEKAISFSSVKPIWERTKDTDDHRGWVFPGSDAEEPGAEPDHLNGAKSVRDLYERASSNYTGKYTVPVLWDKKLKTIVNNESSEIIRMLNTEFNDIAENPALDLYPSHLQAQIDETNGWIYDAINNGVYKCGFARMQQPYDQVSNSAVKELYEALDRCEDILSKQRYLCGNTLSEADVRLFVTIIRFDEVYAVHFKCNKKLLREYPNLFNYTKDIYQTKGVSSSVHMEHIKKHYYGSHPQINPFGIIPLGPNIDYTSPHDRHRFSS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4011383 4014443 - CmoCh18G005360.1 Cmo18g00536 402309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00536 329 Gene3D - 176 329 - -
Cmo18g00536 329 SFLD Xi.1 7 326 IPR016639 GO:0004364
Cmo18g00536 329 CDD GST_C_Omega_like 169 314 - -
Cmo18g00536 329 SUPERFAMILY GST C-terminal domain-like 171 326 IPR036282 -
Cmo18g00536 329 Pfam Glutathione S-transferase, N-terminal domain 48 155 IPR004045 -
Cmo18g00536 329 SUPERFAMILY Thioredoxin-like 23 158 IPR036249 -
Cmo18g00536 329 PIRSF GST 1 325 IPR016639 GO:0004364
Cmo18g00536 329 Pfam Glutathione S-transferase, C-terminal domain 207 275 - -
Cmo18g00536 329 SFLD Glutathione Transferase (cytosolic) 7 326 IPR040079 -
Cmo18g00536 329 PANTHER GLUTATHIONYL-HYDROQUINONE REDUCTASE 1 329 IPR016639 GO:0004364
Cmo18g00536 329 Gene3D Glutaredoxin 2 175 - -
Cmo18g00536 329 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 169 297 IPR010987 -
Cmo18g00536 329 PANTHER BNAC02G31320D PROTEIN 1 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00536 K07393 ECM4, yqjG; glutathionyl-hydroquinone reductase [EC:1.8.5.7] - csv:101218943 608.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00536 Cmo-Chr18:4011383 Cmo19g00127 Cmo-Chr19:734808 1.11E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g167 . . . . . . . . . Cmo18g00536 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007165 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 3 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00536 Cmo_Chr18 FPKM 12.3425 13.265044 10.364448 10.548292 14.36939 14.973961 15.747554 14.490609 13.559913 14.217054