Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00539 ATGGGAGATAGCCAGTACTCCTTTTCTCTCACCACTTTCAGTCCTTCGGGAAAGCTTGTGCAGATCGAGCACGCCTTGACAGCGGTTGGATCTGGTCAGACATCACTCGGTATCAAAGCTGCCAATGGTGTTGTCATCGCAACTGAAAAGAAACTGCCTTCTATCTTGGTTGATGAAACGTCTGTTCAAAAGATCCAGTCTCTGACACCAAATATTGGAGTTGTTTACAGTGGCATGGGTCCCGATTTTAGAGTTCTGGTCAGAAAAAGTAGGAAGCAGGCAGAGCAATACCATAGACTGTACAAGGAACCAATTCCAGTCACTCAACTTGTGAGGGAAACAGCAGCTGTAATGCAGGAGTTCACCCAATCTGGAGGTGTAAGGCCCTTTGGAGTATCTCTTTTGGTTGCAGGGTTTGATGACAATGGTCCTCAATTATACCAGGTGGACCCATCCGGTTCATATTTCTCTTGGAAGGCCTCTGCAATGGGGAAGAATGTTTCTAACGCCAAAACCTTTCTAGAAAAAAGGTATACTGATGATATGGAGCTTGATGATGCTGTGCACACTGCTATCTTAACCTTGAAAGAGGGATTTGAAGGACAGATCTCAGGCAAAAACATTGAAATTGGAATAATTGGCACGGATAAGAAATTCAGAGTACTAACCCCTGCTGAGATTGATGATTATTTGGCTGAAGTAGAGTAA 708 44.07 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISGKNIEIGIIGTDKKFRVLTPAEIDDYLAEVE 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4100568 4106127 + CmoCh18G005390.1 Cmo18g00539 402312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00539 235 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 234 IPR029055 -
Cmo18g00539 235 CDD proteasome_alpha_type_2 6 232 - -
Cmo18g00539 235 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Cmo18g00539 235 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 235 - -
Cmo18g00539 235 Pfam Proteasome subunit 31 213 IPR001353 GO:0005839|GO:0051603
Cmo18g00539 235 ProSiteProfiles Proteasome alpha-type subunit profile. 21 231 IPR023332 -
Cmo18g00539 235 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Cmo18g00539 235 PANTHER PROTEASOME ENDOPEPTIDASE COMPLEX 1 235 IPR034644 GO:0019773
Cmo18g00539 235 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 235 IPR029055 -
Cmo18g00539 235 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00539 K02726 PSMA2; 20S proteasome subunit alpha 2 [EC:3.4.25.1] - zju:107419709 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00699 Cmo-Chr3:6083070 Cmo18g00539 Cmo-Chr18:4100568 1.08E-45 dispersed
Cmo08g00777 Cmo-Chr8:4898421 Cmo18g00539 Cmo-Chr18:4100568 4.22E-44 dispersed
Cmo13g00457 Cmo-Chr13:5627150 Cmo18g00539 Cmo-Chr18:4100568 7.23E-172 dispersed
Cmo16g01291 Cmo-Chr16:9198015 Cmo18g00539 Cmo-Chr18:4100568 1.29E-55 dispersed
Cmo17g00658 Cmo-Chr17:6824834 Cmo18g00539 Cmo-Chr18:4100568 3.73E-43 dispersed
Cmo18g00538 Cmo-Chr18:4085957 Cmo18g00539 Cmo-Chr18:4100568 3.14E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g171 Blo01g00909 . . . . . . . . Cmo18g00539 . Cma18g00561 . . . Cpe09g00678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002157 3 3 1 2 3 2 2 2 2 2 2 2 2 2 2 3 2 3 3 2 1 1 1 1 2 1 2 2 1 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00539 Cmo_Chr18 FPKM 0.818121 1.187284 2.025815 2.192807 1.321598 1.555549 1.303893 6.371177 6.925981 6.810367