Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00542 ATGGCGCGAAAGTATTCTCTTCTCAAGCAAACCCTAGCTTCTCTCTGCTTTATTCTCGCCCTATACGCCATCATCAACACTTTAATCAGCTCCACCGCCACTCTGAAACTCGACCGCTCCTTCCCCTTCGACATTGCCAATTCCGTCATGGTTTCGGATGAGCTTGATTCTCAAGAAATTGATTTCCCCAATACTTCAGGGAAATCGGTTTTTCCTGTGAAGATTTATCACTACGATGTGCCGACCAGGTTTACGTTTGGTGTAATTGAGCACCACGGCATAGCGCGCGGAGGAAAGACCATTGGTAAAATCACGGAGCTCAAGTATCCAGGCCATCAGCACATGGCGGAATGGTTTTTGTTCTCGGATCTGCTTCGACCGGAGTCGGAGCGTGTTGAGTCTGCTGTGGTTAGGGTGATGGATCCTGAGGAAGCGGATTTGTTCTATGTTCCGTTCTTCTCGTCCTTAAGCTTGATCGTCAACCCTATTCGACCTGCGGCAGGGTCGAATCAGCAGCAGCGGAAGCTTGCCTACAGTGACGAGGAGACGCAGAAGGCTTTGATGGAGTGGTTGGAGAAGCAGGAGTACTGGAAGCGGAACAATGGGCGGGATCATGTCATTATAGCGCAGGACCCAAATGCATTGTACAAGGTGATTGATACGGTTAAAAGCAGCATATTACTCATTTCGGATTTCGGCCGGTTGAGATCAGACCAAGCTTCACTAGTGAAGGACGTGATCATACCATACTCCCATAGGATCAGTACATATAATGGTGATATTGGAATTGAGAATCGCAAGACTTTGCTGTTCTTCATGGGCAATCGATACCGTAAAGAGGGAGGAAAAATTCGTGATATGCTTTTCAATATACTTGAGAAAGAACGGAATGTCATAATCAAACATGGAACACAATCAAGAGAGAATAGGCGTGCTGCTACACATGGTATGCATACATCTAAGTTCTGCTTGAATCCTGCTGGTGACACTCCCTCTGCTTGTCGACTCTTTGACTCTGTAGTAAGCTTGTGTGTACCAGTGATTGTCAGTGATAGAATTGAGTTGCCTTTTGAAGATGTTATAGATTACTCCAAGATTGCGGTGTTTTTCGATTCGGTTTCTGCAGTGAAACCTGGATTTTTAGTTTCAAAGCTGAGGAAAATATCTAAACAGAGGATTCTGGACTATCAGAGAGAAATGAAAGAGGTAAAGAGATACTTCGAGTACACAGACTCAAATGGCACAGTGAACGAAATATGGCGTCAAGTCTCACAGAAGTTACCTCTCATTAAGCTAATGATTAATCGTGAAAAGAGGGTGATTCATAGAGAAGTTGATAAACCAGACTGTTCTTGTCTCTGTGCAAACCAAACTGGCATCAGGGCCAGACTATAA 1395 44.8 MARKYSLLKQTLASLCFILALYAIINTLISSTATLKLDRSFPFDIANSVMVSDELDSQEIDFPNTSGKSVFPVKIYHYDVPTRFTFGVIEHHGIARGGKTIGKITELKYPGHQHMAEWFLFSDLLRPESERVESAVVRVMDPEEADLFYVPFFSSLSLIVNPIRPAAGSNQQQRKLAYSDEETQKALMEWLEKQEYWKRNNGRDHVIIAQDPNALYKVIDTVKSSILLISDFGRLRSDQASLVKDVIIPYSHRISTYNGDIGIENRKTLLFFMGNRYRKEGGKIRDMLFNILEKERNVIIKHGTQSRENRRAATHGMHTSKFCLNPAGDTPSACRLFDSVVSLCVPVIVSDRIELPFEDVIDYSKIAVFFDSVSAVKPGFLVSKLRKISKQRILDYQREMKEVKRYFEYTDSNGTVNEIWRQVSQKLPLIKLMINREKRVIHREVDKPDCSCLCANQTGIRARL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4119526 4121949 - CmoCh18G005420.1 Cmo18g00542 402315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00542 464 Pfam Exostosin family 73 384 IPR040911 -
Cmo18g00542 464 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 1 446 IPR004263 GO:0006486|GO:0016757
Cmo18g00542 464 PANTHER ARABINOSYLTRANSFERASE ARAD1-RELATED 1 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00450 Cmo-Chr13:5570358 Cmo18g00542 Cmo-Chr18:4119526 0 dispersed
Cmo15g00635 Cmo-Chr15:3076734 Cmo18g00542 Cmo-Chr18:4119526 3.64E-14 dispersed
Cmo18g00542 Cmo-Chr18:4119526 Cmo12g00058 Cmo-Chr12:306448 2.40E-72 dispersed
Cmo05g01048 Cmo-Chr5:8460626 Cmo18g00542 Cmo-Chr18:4119526 1.75E-81 transposed
Cmo09g01168 Cmo-Chr9:7633404 Cmo18g00542 Cmo-Chr18:4119526 3.21E-88 transposed
Cmo13g00449 Cmo-Chr13:5562977 Cmo18g00542 Cmo-Chr18:4119526 6.57E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00542 K23200 - csv:101216577 808.135