Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00542 ATGGCGCGAAAGTATTCTCTTCTCAAGCAAACCCTAGCTTCTCTCTGCTTTATTCTCGCCCTATACGCCATCATCAACACTTTAATCAGCTCCACCGCCACTCTGAAACTCGACCGCTCCTTCCCCTTCGACATTGCCAATTCCGTCATGGTTTCGGATGAGCTTGATTCTCAAGAAATTGATTTCCCCAATACTTCAGGGAAATCGGTTTTTCCTGTGAAGATTTATCACTACGATGTGCCGACCAGGTTTACGTTTGGTGTAATTGAGCACCACGGCATAGCGCGCGGAGGAAAGACCATTGGTAAAATCACGGAGCTCAAGTATCCAGGCCATCAGCACATGGCGGAATGGTTTTTGTTCTCGGATCTGCTTCGACCGGAGTCGGAGCGTGTTGAGTCTGCTGTGGTTAGGGTGATGGATCCTGAGGAAGCGGATTTGTTCTATGTTCCGTTCTTCTCGTCCTTAAGCTTGATCGTCAACCCTATTCGACCTGCGGCAGGGTCGAATCAGCAGCAGCGGAAGCTTGCCTACAGTGACGAGGAGACGCAGAAGGCTTTGATGGAGTGGTTGGAGAAGCAGGAGTACTGGAAGCGGAACAATGGGCGGGATCATGTCATTATAGCGCAGGACCCAAATGCATTGTACAAGGTGATTGATACGGTTAAAAGCAGCATATTACTCATTTCGGATTTCGGCCGGTTGAGATCAGACCAAGCTTCACTAGTGAAGGACGTGATCATACCATACTCCCATAGGATCAGTACATATAATGGTGATATTGGAATTGAGAATCGCAAGACTTTGCTGTTCTTCATGGGCAATCGATACCGTAAAGAGGGAGGAAAAATTCGTGATATGCTTTTCAATATACTTGAGAAAGAACGGAATGTCATAATCAAACATGGAACACAATCAAGAGAGAATAGGCGTGCTGCTACACATGGTATGCATACATCTAAGTTCTGCTTGAATCCTGCTGGTGACACTCCCTCTGCTTGTCGACTCTTTGACTCTGTAGTAAGCTTGTGTGTACCAGTGATTGTCAGTGATAGAATTGAGTTGCCTTTTGAAGATGTTATAGATTACTCCAAGATTGCGGTGTTTTTCGATTCGGTTTCTGCAGTGAAACCTGGATTTTTAGTTTCAAAGCTGAGGAAAATATCTAAACAGAGGATTCTGGACTATCAGAGAGAAATGAAAGAGGTAAAGAGATACTTCGAGTACACAGACTCAAATGGCACAGTGAACGAAATATGGCGTCAAGTCTCACAGAAGTTACCTCTCATTAAGCTAATGATTAATCGTGAAAAGAGGGTGATTCATAGAGAAGTTGATAAACCAGACTGTTCTTGTCTCTGTGCAAACCAAACTGGCATCAGGGCCAGACTATAA 1395 44.8 MARKYSLLKQTLASLCFILALYAIINTLISSTATLKLDRSFPFDIANSVMVSDELDSQEIDFPNTSGKSVFPVKIYHYDVPTRFTFGVIEHHGIARGGKTIGKITELKYPGHQHMAEWFLFSDLLRPESERVESAVVRVMDPEEADLFYVPFFSSLSLIVNPIRPAAGSNQQQRKLAYSDEETQKALMEWLEKQEYWKRNNGRDHVIIAQDPNALYKVIDTVKSSILLISDFGRLRSDQASLVKDVIIPYSHRISTYNGDIGIENRKTLLFFMGNRYRKEGGKIRDMLFNILEKERNVIIKHGTQSRENRRAATHGMHTSKFCLNPAGDTPSACRLFDSVVSLCVPVIVSDRIELPFEDVIDYSKIAVFFDSVSAVKPGFLVSKLRKISKQRILDYQREMKEVKRYFEYTDSNGTVNEIWRQVSQKLPLIKLMINREKRVIHREVDKPDCSCLCANQTGIRARL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4119526 4121949 - CmoCh18G005420.1 Cmo18g00542 402315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00542 464 Pfam Exostosin family 73 384 IPR040911 -
Cmo18g00542 464 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 1 446 IPR004263 GO:0006486|GO:0016757
Cmo18g00542 464 PANTHER ARABINOSYLTRANSFERASE ARAD1-RELATED 1 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00542 K23200 ARAD; putative arabinosyltransferase [EC:2.4.2.-] - csv:101216577 808.135
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00450 Cmo-Chr13:5570358 Cmo18g00542 Cmo-Chr18:4119526 0 dispersed
Cmo15g00635 Cmo-Chr15:3076734 Cmo18g00542 Cmo-Chr18:4119526 3.64E-14 dispersed
Cmo18g00542 Cmo-Chr18:4119526 Cmo12g00058 Cmo-Chr12:306448 2.40E-72 dispersed
Cmo05g01048 Cmo-Chr5:8460626 Cmo18g00542 Cmo-Chr18:4119526 1.75E-81 transposed
Cmo09g01168 Cmo-Chr9:7633404 Cmo18g00542 Cmo-Chr18:4119526 3.21E-88 transposed
Cmo13g00449 Cmo-Chr13:5562977 Cmo18g00542 Cmo-Chr18:4119526 6.57E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g141 . . Bda01g02180 . . . . . . Cmo18g00542 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00952 . Cec01g0977 Cco01g1024 Clacu01g0983 Cmu01g0936 Cre01g0865 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005267 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00542 Cmo_Chr18 FPKM 4.541641 5.084264 7.729982 7.353762 6.514314 7.204793 7.042976 5.241934 5.416176 6.821933