Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00544 ATGGCTTTCTGGGTGTTTTTCTTCTTGATCTTTGGTTCTGTTCCGCTTGTTCCTGCTCTTACTCTTGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCACAGCTGACTGGCTGGATTGGTAGTGGCGGTGATCCATGTGTTGAGTTATGGAAAGGGGTGACATGTGAAGGCTCTGCTGTTGTCTCCATTGAGATTTCCGGGTTGGGGCTGAATGGCACGATGGGCTATGCGCTCTCGAGTCTTATTTCATTGAGAAATCTTGATATGAGCAACAACAATATTCACGACACGATTCCTTACCAACTACCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAAATTAACTGGTAATCTTCCTTATTCACTTTCCACCATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGCTCAGGCGATAGGAGACGTTTTCACGAATCTTACTTCCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACCGGGGATCTTCCGAATTCCTTGAGCTCATTGTCGAATATTTCTTCTCTCTTTTTACAGAACAATCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTCTAACGACGCTAAATGTAGCGAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTCGACAACAGTCCTGCACCTCCTCCACCCCCTTTTACTCCACCTCCTCCCGGTAGATCTCGTAACAGCCCCCGACGCCCTGGGTCCGGTGGTGGCAACCACACTGCCTCAAGCTCTGATAGCAGTTCATCAAACTCGAAGAAAGGCTTGTCAGTTTTGGAAATAGTAGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTATGCATCCAGAAGAGAAAACGGAAGAACATCGGTCTACGAGCTTCGAGCGGAAGGCTGTCTATTGGCACTAGCGTGAATACGGAGGTGCACGAGCATCGGGTTAAAAGCGTTGCTGCTGTTGCAGATATTAAGCCACTTCCTGCGGAGAAAATGAATCCCGAGAGATTACAAGCGAAAAACGGATCGGTGAAAAGGATAAAGTCCCCTATTACTGCTACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGTATAGTCGGTGAAGGCTCTCTCGGTCGTGTTTACAAAGCCGAGTTTCCAAACGGGAAGATAATGGCGATCAAGAAAATCGACAATGCGGCATTGTCGCTACAGGAAGAAGACAATTTTCTTGAAGCGGTCTCAAACATGTCAAGATTGAGGCACACGAATATTGTGACACTAAATGGTTATTGCGTCGAGCATGGTCAGCGTCTTCTCGTTTACGAGTTCATTGGTAATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGATAGTAGCAAGACACTGACTTGGAACGCACGTGTCCGAGTAGCACTTGGAACAGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACAGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCTGATTCCGGTTTGGCTGCTTTAACGCCCAACACAGAGCGACAGGTTTCTACTCAGATGGTTGGTTCCTTTGGCTACAGTGCTCCGGAATTTGCCTTGTCGGGAATATACACCGTTAAAAGCGACGTGTACAGCTTTGGCGTGGTGATGTTGGAGCTGTTGACGGGACGAAAGCCGCTTGATAGTTCGCGGGTGAGATCGGAGCAGTCGCTTGTGAGATGGGCTACTCCCCAACTTCACGATATTGACGCCTTAGCGAAAATGGTCGATCCTACTTTGAATGGAATGTACCCGGCAAAATCTCTATCGCGCTTTGCCGACATCATTGCTCTATGTGTTCAGCCGGAACCCGAATTTCGACCTCCAATGTCGGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAGAGGCATTCGAGCGACGAGTCGGGTTTCAGTTACAAAACACCAGACCACGATGCAGTTGAGTTGCCATTTTGA 2124 45.43 MAFWVFFFLIFGSVPLVPALTLASDVQALQVIYTSLNSPPQLTGWIGSGGDPCVELWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLISLRNLDMSNNNIHDTIPYQLPPNLTSLNMAKNKLTGNLPYSLSTMASLNYLNMSHNLLAQAIGDVFTNLTSLGTLDLSFNNFTGDLPNSLSSLSNISSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPRRPGSGGGNHTASSSDSSSSNSKKGLSVLEIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNTEVHEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCVEHGQRLLVYEFIGNGSLHDMLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDSGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4215426 4221051 + CmoCh18G005440.1 Cmo18g00544 402317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00544 707 ProSiteProfiles Protein kinase domain profile. 399 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00544 707 CDD STKc_IRAK 405 676 - -
Cmo18g00544 707 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 19 702 - -
Cmo18g00544 707 MobiDBLite consensus disorder prediction 263 284 - -
Cmo18g00544 707 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cmo18g00544 707 Pfam Protein tyrosine and serine/threonine kinase 404 673 IPR001245 GO:0004672|GO:0006468
Cmo18g00544 707 MobiDBLite consensus disorder prediction 240 259 - -
Cmo18g00544 707 Gene3D Transferase(Phosphotransferase) domain 1 477 700 - -
Cmo18g00544 707 Gene3D Ribonuclease Inhibitor 20 250 IPR032675 -
Cmo18g00544 707 PANTHER OS01G0253100 PROTEIN 19 702 IPR045271 GO:0004714|GO:0006468
Cmo18g00544 707 SUPERFAMILY Protein kinase-like (PK-like) 379 673 IPR011009 -
Cmo18g00544 707 SUPERFAMILY L domain-like 22 228 - -
Cmo18g00544 707 MobiDBLite consensus disorder prediction 237 284 - -
Cmo18g00544 707 Gene3D Phosphorylase Kinase; domain 1 360 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00436 Cmo-Chr14:2060987 Cmo18g00544 Cmo-Chr18:4215426 4.69E-111 dispersed
Cmo14g01254 Cmo-Chr14:10564460 Cmo18g00544 Cmo-Chr18:4215426 0 dispersed
Cmo17g00626 Cmo-Chr17:6571058 Cmo18g00544 Cmo-Chr18:4215426 0 dispersed
Cmo18g00544 Cmo-Chr18:4215426 Cmo19g01004 Cmo-Chr19:8914284 1.39E-48 dispersed
Cmo13g00445 Cmo-Chr13:5527773 Cmo18g00544 Cmo-Chr18:4215426 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75061 PF07714 PK_Tyr_Ser-Thr 7.40E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00544 - - mcha:111012621 1210.67