Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00546 ATGTCCACTCTAACAGATGTAGTTTCAGCAATAGATCAAGCAGTGATCGATGGAGTTGATATATTGGCATTATCGGTCGGACCAAATGAACCACCCGAAGAAGGACTTACCTTCCTAAGCATATACGACATTGCCATATTATCTGCTACGCGAGCTGGGATCCTTGTGGTTCAGGCAGTCGGAAACAACGGCCCAGCCCCAGCAACCGTTGTCTCGTACAGCCCATGGTCGGTCGGCGTTGCAGCTTCAGGCACTGACAGAGTTTATCCGGCCTCACTTCTTCTTGGCAATGGCCAGAAAGTTGGAGGAGTAGGATTATCTGGACCCACTTTTTTTCTACATAAACTGGTATTAGCCAAGGATGCAATGAACCAAAATGGGACAATGCCCAGTGAAGAGTGCCAATATCCTGAAGCTTTTGACCCAAATCTTGTCCAAAACAGCATAGTCCTCTGCTCTTTCTCTCAAGGATTCCTCAATGGCACCTCCTCCCTCGCAGCCATCATCCACACTGCAACGACACTCCGATTCATCGGGTTCGCTCTCATTGCAAATCCTAACTACGGCGATTTCATCGCTGAGCCCATCCCTTTCGGACTTCCTGGCATTCTCATCCCGAACGCATCAGATTCCCAGGCGATACTAAAGTACTACGAAGCAAATACATGCAAGGATGACAATGGAATGGTCAGTGAATTTAAAGGGAAAGCGGCTATAGGAGAAGGAAGAGTTGCTTCATTTGGAAGCCAAGCACCAACAGTGAGCAGATTTTCATCCAGAGGCCCAGATTATATGAACATGAACAGGACAGTAGCTGATGTGCTAAAGCCAGATATTCTTGCACCTGGCCACCAAATTTGGGCTGCTTGGAGCCCTCTCAGTGTCACAGAGCCACTTTTGAAGGGTTACCAATTTGCACTGATGTCTGGAACAAGTATGGCAGCACCTCATATAGTGGGAATAGCAGCACTTATTAAGCAAAAGAATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCAACAACTGCCACAAAGTATGATATGAATGGAGACCTTATTCAGGCTGAGGGATTCAACATTCATCGTTTATATCCTTCTACTCCCTTTGATTTGGGCGCTGGCCTTGTCAAACCGACCAACGCTTTGGATCCAGGACTGGTCTTCCCAGCAGAATATGAAGACTACATAAACTTCTTGTGCTCATTACCTGGGGATCCTGCTGTCATAAAAAATACCACTGGAGGACAGTGCAACGCCTCTGAACCACAGCCACACCCTGCAGATCTGAACCTTCCTTCAGTCACAATATCATCACTGGTTGGGCATCAGGTGCTGCACAGAAGAGTGAAGAATGTAGGAACCAAAGTGGAGACATACGTGTGGTCAGTGATCCCACCAAATGGGACAACAATCAACATCAATCCACCATGGTTCACCATAGCACCAGGAGGACTCCAAAACTTGGAAATACAGATCAAAGTTACACAAAAAATGAATCACTTTACCTTTGGGGAGATTATTTTCACAGGAAGTTTAAACCATATTGGAAGGATCCCTTTGTCAGTTTTGGCTGTTTCTGTATCCTAA 1593 46.14 MSTLTDVVSAIDQAVIDGVDILALSVGPNEPPEEGLTFLSIYDIAILSATRAGILVVQAVGNNGPAPATVVSYSPWSVGVAASGTDRVYPASLLLGNGQKVGGVGLSGPTFFLHKLVLAKDAMNQNGTMPSEECQYPEAFDPNLVQNSIVLCSFSQGFLNGTSSLAAIIHTATTLRFIGFALIANPNYGDFIAEPIPFGLPGILIPNASDSQAILKYYEANTCKDDNGMVSEFKGKAAIGEGRVASFGSQAPTVSRFSSRGPDYMNMNRTVADVLKPDILAPGHQIWAAWSPLSVTEPLLKGYQFALMSGTSMAAPHIVGIAALIKQKNPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNIHRLYPSTPFDLGAGLVKPTNALDPGLVFPAEYEDYINFLCSLPGDPAVIKNTTGGQCNASEPQPHPADLNLPSVTISSLVGHQVLHRRVKNVGTKVETYVWSVIPPNGTTININPPWFTIAPGGLQNLEIQIKVTQKMNHFTFGEIIFTGSLNHIGRIPLSVLAVSVS 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4233676 4237326 - CmoCh18G005460.1 Cmo18g00546 402319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00546 530 ProSitePatterns Serine proteases, subtilase family, serine active site. 310 320 IPR023828 -
Cmo18g00546 530 CDD PA_subtilisin_like 92 222 - -
Cmo18g00546 530 ProSiteProfiles Serine proteases, subtilase domain profile. 1 384 - -
Cmo18g00546 530 Gene3D Peptidase S8/S53 domain 5 397 IPR036852 GO:0004252|GO:0006508
Cmo18g00546 530 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 4 525 IPR045051 -
Cmo18g00546 530 Pfam Fibronectin type-III domain 430 524 IPR041469 -
Cmo18g00546 530 Gene3D - 401 527 - -
Cmo18g00546 530 Gene3D - 86 247 - -
Cmo18g00546 530 Pfam Subtilase family 4 349 IPR000209 GO:0006508|GO:0008236
Cmo18g00546 530 PANTHER SUBTILISIN-LIKE PROTEASE SBT2.6 4 525 - -
Cmo18g00546 530 SUPERFAMILY Subtilisin-like 3 388 IPR036852 GO:0004252|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01474 Cmo18g00546 CCT
Cmo07g00039 Cmo18g00546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00546 Cmo-Chr18:4233676 Cmo04g00042 Cmo-Chr4:245545 7.67E-48 dispersed
Cmo18g00546 Cmo-Chr18:4233676 Cmo12g00913 Cmo-Chr12:8405049 3.88E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00546 - - mcha:111012715 900.582