Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00564 ATGCAGAAATCCCATCGACTCGTAAAGCTCGCTCCGAGTTTCCTTGAAGGGAGAGAAATGGATAATACGAAGATGGCGAAAAGGTTTCAGGGGAAGGTTGCCATTGTTACTGCTTCCACTCAAGGTATTGGCTTCCGAATCGCCCATCGTCTCGCCTTGGAAGGTGCCTCTGTCGTCATTTCTTCCCGCAGACAGAGAAACGTCGATGAGGCAGTTGAAAAACTCAAAGCTGAAGGACTTGAAGTGTTGGGGATTGTTTGTCATGTATCAAATGCACAGCAAAGGAAGAATCTGGTGGAAAAGACTATCCAGAAATATGGAAAAATAGACGTAGTTGTATCGAATGCAGCTGTCAATCCATCAGTCGATTCAATTTTGCGAACTCAAGAAGCTATTCTTGACAAGCTGTGGGACATAAATGTTAAAGCTTCGGTCCTCCTTTTGCAGGATGTAGCTCCTCATTTGCAGAAAGGCTCTTCAGTTGTTCTAATTTCCTCCATTGAAGGGTTCCAGCCTTCTGCCTTATTGGCCATGTATGGGGTGACAAAAACAGCTCTTCTTGGACTGACAAAGGCTCTTGCAGCAGAGATGGCCCCCGACACTCGTGTAAACTGTGTCGCACCCGGTTTCGTGCCAACACACTTTGCTGATTTCCTTGTGTCTAATGAGGCCATTAAGAAGGAGGTTGAGTCAAAGACATTACTCAACCGGCTTGGTACGACGGAGGACATGGCTGCTGCCACCGCCTTCCTGGCATCAGATGATGCTTCGTACATTACAGGTGAAACTCTGGTGGTGGCCGGGGGGATGCCTTCCAGACTCTAG 825 47.64 MQKSHRLVKLAPSFLEGREMDNTKMAKRFQGKVAIVTASTQGIGFRIAHRLALEGASVVISSRRQRNVDEAVEKLKAEGLEVLGIVCHVSNAQQRKNLVEKTIQKYGKIDVVVSNAAVNPSVDSILRTQEAILDKLWDINVKASVLLLQDVAPHLQKGSSVVLISSIEGFQPSALLAMYGVTKTALLGLTKALAAEMAPDTRVNCVAPGFVPTHFADFLVSNEAIKKEVESKTLLNRLGTTEDMAAATAFLASDDASYITGETLVVAGGMPSRL 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4667435 4672337 + CmoCh18G005640.1 Cmo18g00564 402337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00564 274 PANTHER TROPINONE REDUCTASE-LIKE 3 24 274 - -
Cmo18g00564 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 270 IPR036291 -
Cmo18g00564 274 Gene3D - 20 272 - -
Cmo18g00564 274 PRINTS Glucose/ribitol dehydrogenase family signature 33 50 IPR002347 -
Cmo18g00564 274 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cmo18g00564 274 PRINTS Glucose/ribitol dehydrogenase family signature 153 169 IPR002347 -
Cmo18g00564 274 PRINTS Glucose/ribitol dehydrogenase family signature 179 198 IPR002347 -
Cmo18g00564 274 PRINTS Glucose/ribitol dehydrogenase family signature 199 216 IPR002347 -
Cmo18g00564 274 PRINTS Glucose/ribitol dehydrogenase family signature 234 254 IPR002347 -
Cmo18g00564 274 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 166 194 IPR020904 GO:0016491
Cmo18g00564 274 PANTHER DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 24 274 - -
Cmo18g00564 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cmo18g00564 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 167 IPR002347 -
Cmo18g00564 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 198 IPR002347 -
Cmo18g00564 274 Pfam Enoyl-(Acyl carrier protein) reductase 41 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00230 Cmo-Chr18:1505401 Cmo18g00564 Cmo-Chr18:4667435 1.49E-21 dispersed
Cmo18g00564 Cmo-Chr18:4667435 Cmo02g01033 Cmo-Chr2:6278550 2.20E-27 dispersed
Cmo18g00564 Cmo-Chr18:4667435 Cmo04g01235 Cmo-Chr4:6278066 1.79E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00564 K11147 - csv:101214017 436.802