Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00576 ATGGAGTCTGGTGATGTTGAACAATCCTTGCTTCCCAAGCTGTCCGATTCCAAAAAGAGCAATTCTCTCCAGAGAAGAAAATCGATCCATCATGAAATTTTTTCACGTTCATTAGAACATAACAATCAACCACGAAACGGTGATGAAACGTCTCATCAACGTGTGATTGTTAAACAAGTTAGTTTTAGGAAAGTATTTGTTGTGCTGGCTATTTATTTGGGAGGAGGAACACTTTGTTTCTTCCTTGTTGGAGATCAAATCAATGGCAAGAAAACAAACGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACTGTTGGGTATGGTGATCTTGTTCCTAATAGCATTGGTGCAAAACTACTTGCTTGTGCTTATGTCTTCACTGGAATTACTCTTGGTGGGATGCTTCTTAGCAGGGCGGCCAATTACATTGTCGAAAAGCAGGAAATTCATCTGGTTAAGGCCATTTTCATGAGCAAAAAGATCAGCTCCGGTGAGCTCCTTCGAGAGTCTGTGGCACACAAACTCAAATACAAAATCATTATGACTGGAATCGTCCTTTGGGTTCTCGTTGTTGTCGGTATTCTTTTCTTGATTCTGGTTGAGAAGTTTGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGACAAGAGCTTCTCTACAACAACTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTTGCCGAATTACGCGCCGAGAGGAGACAGAAATCACTAGTGAATAGGGTTCTCTCCCGAGACCTCACTTTCTCTGATCTCGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCTGAATTTGTTGTATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGATGTTTCTCCAATACTTGACACTTTTTATAAGCTTGACATTGATCAATCAGGAAACTTAACAGAAGCTGATTTAGTAACTTCATAG 1026 40.35 MESGDVEQSLLPKLSDSKKSNSLQRRKSIHHEIFSRSLEHNNQPRNGDETSHQRVIVKQVSFRKVFVVLAIYLGGGTLCFFLVGDQINGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIGAKLLACAYVFTGITLGGMLLSRAANYIVEKQEIHLVKAIFMSKKISSGELLRESVAHKLKYKIIMTGIVLWVLVVVGILFLILVEKFEFTDAFYCVCSTITTLGYGDKSFSTTTGRVFAVIWIMSSTICLAQFFLYLAELRAERRQKSLVNRVLSRDLTFSDLEEADLDHDKVVSAAEFVVYKLKEMGKINQEDVSPILDTFYKLDIDQSGNLTEADLVTS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5464120 5468474 + CmoCh18G005760.1 Cmo18g00576 402349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00576 341 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Cmo18g00576 341 MobiDBLite consensus disorder prediction 1 25 - -
Cmo18g00576 341 ProSitePatterns EF-hand calcium-binding domain. 287 299 IPR018247 -
Cmo18g00576 341 Gene3D - 164 267 - -
Cmo18g00576 341 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 17 338 - -
Cmo18g00576 341 SUPERFAMILY Voltage-gated potassium channels 60 155 - -
Cmo18g00576 341 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 17 338 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo18g00576 341 SUPERFAMILY Voltage-gated potassium channels 179 278 - -
Cmo18g00576 341 Pfam Ion channel 68 148 IPR013099 -
Cmo18g00576 341 Pfam Ion channel 189 259 IPR013099 -
Cmo18g00576 341 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo18g00576 341 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo18g00576 341 Gene3D - 56 154 - -
Cmo18g00576 341 SUPERFAMILY EF-hand 278 339 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01373 Cmo-Chr3:10089701 Cmo18g00576 Cmo-Chr18:5464120 6.52E-65 dispersed
Cmo09g01006 Cmo-Chr9:5354417 Cmo18g00576 Cmo-Chr18:5464120 3.56E-120 dispersed
Cmo18g00576 Cmo-Chr18:5464120 Cmo01g01125 Cmo-Chr1:9286483 1.08E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00576 K05389 - csv:101214791 522.702