Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00596 ATGTATACTTCTTTTGGAAACATTGTTAAACGGACCAAAAATCTTTGTTCTTTGGAGCCTAAGATTATTAATCATATTGAGAACTCTTGCAAATCTAGCTTCTTAGCTGGGAATATTGGAGATGGAAGTGGTTGTCCAACCAAGATGAATATTGAATCAGAGCGTGAAACCGAATGGGAGAGTTTACTAGAACCTTTTGATCTCACAAAGCTTAGAAAGTCTCACATTCTGATTACCCCTGTTCAACTATGCAAATTGCTTGAGCTTCCACTTGATGTGCCCACATTGTTGGAAATATTTGAACGGGTGGGTGCCCAAAAGGGTTATTGCCATACATTTGATGTATACTATGTGCTAATAAATAAGCTTGGAACAATTGGGGAGTTCAAGGTTATAGATAAACTGTTAACACAGATGAAAGAAGAAGGGATTGTTTTTCGAGAGTCCATTTTCATGATCATTATGAAACATTATGGGAAAGCTGGACAACCTGGACAGGCAATTCGATTGCTCCTAGATATGAGAGCTGTTTATTCATGTGAATCAACTTTTGAATCTTATAATGTAGTTTTGGAAACACTCGTGACGGGCAATTGTCCAAAAGTTGCTACGAATGTTTATTATGACATGTTGAGTAAGGGTATTTCTCCTACTGTTTTTACTTTTGGCATTGTGATGAAAGCTCTTTGTATGATTAATGAGGTCGACTCTGCATGCTCACTCCTTAGAGACATGACAAAGCATGGATGTGTACCGAATTCTATAGTTTATCAGACGTTAATACATGCGCTATCCAAAAATAACCAAGTTAGTGAAGCGTTAAAGCTTTTAGAAGAAATGTTTGTTATGGGATGCATGCCTGATGTTCAAACCTTCAATGATGTTATTCATGGCCTCTGCAAGGTAAATAAAATTCAAGATGCAGCAAAATTGGTTGATCGAATGCTTCTTCGAGGTTTTAACCCAGATAGTATGACTTATGGTTTTCTGTTGCATGGATTATGTAGGATTGGAAAACTCAATGAAGCAAGAGCATTATTGAACAAAATTCCTTGTCCAAATAATGCGATCTTGAATACGTTAATCAATGGGTATGTTATGAGTGGACGACTTAAGGAAGCTCAAAGCTTTCTTAATGAGACTATGATAAACTTTGGTTTTGACCCTGATATTTTTACATACAACATCTTGATGCATGGGCTTTGCAAAGAGGGGAGTCTTGGTTTTGCTCGTGATTTGGTTAATGAGATGTCTAGGAGGGGTTGCAAGCCGAATGTGATCACATATGCAATATTGATTGATGGGCTTTGTAAAGCTGGGTGTCTTGAAGAGGCTGGTCTTGTTTTACATGAGATGTCAACAAAGGGATTGACTATAAATACAGTTATATACAATTGCTTGATATGCGCCCTATGTAGGAATGAGAAGGTTCATGCTGCTTTAAATCTGTTTCGTGAAATGCCCACGAAAGGTTGCAAGCCCGACTTATTTACATACAATTCTCTAATCTTTGGATTGTGCAAGGTTGATCAGATTGATGAAGCCTTCAGGTTGTTTCATAATTTGTTATTGGACGGTGTTGTTGCCAACAACGTGACTTACAATACACTGATTCATGCACTTTTGAGGAGAGGTGCATTCCAAGAAGCGCTTACACTTGTTAATGATATGTTGTTCAGAGGCTGCATCCTCGATAAGATTACTTACAATGGACTGATAAAAGCGTTTTGCAAAGCTGGGAATGTTGAAAAAGGATTGGAATTATACGAGAAAATGATAATGGATGGACTTAACGCTGATACAATATCGTGTAATATTCTCATCAACGGGCTCTGTAAAGTTGGAAAAGTGGACAATGCATTTGAGTTTCTAAGAGATGCGATTAATCGAGGTTTCGTGCCTGACATAGTCACATATAACAGCGTTATAAATGGACTTTGCAAGGTTGGACGTATCAGGGAAGCCTTAAATCTATTTGATAGATTACAAGTCGAAGGTGTTCGCCCTGATGCTTTTACGTATAATACTTTTATCAGTTGGCACTGTAAAGAAGGCATGGTGAATGATGCTTGTTTATTTTTTTATAGAGGTATAGAGAATGGTTTTGTACCTAGTAATGTGACTTGGAATGTGCTGGTCAATACTTTGGTAAAACAAAGTCACGAGAATATGTTTTTCGTGTCAGATGAGTTCTGA 2196 37.52 MYTSFGNIVKRTKNLCSLEPKIINHIENSCKSSFLAGNIGDGSGCPTKMNIESERETEWESLLEPFDLTKLRKSHILITPVQLCKLLELPLDVPTLLEIFERVGAQKGYCHTFDVYYVLINKLGTIGEFKVIDKLLTQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYSCESTFESYNVVLETLVTGNCPKVATNVYYDMLSKGISPTVFTFGIVMKALCMINEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSKNNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIQDAAKLVDRMLLRGFNPDSMTYGFLLHGLCRIGKLNEARALLNKIPCPNNAILNTLINGYVMSGRLKEAQSFLNETMINFGFDPDIFTYNILMHGLCKEGSLGFARDLVNEMSRRGCKPNVITYAILIDGLCKAGCLEEAGLVLHEMSTKGLTINTVIYNCLICALCRNEKVHAALNLFREMPTKGCKPDLFTYNSLIFGLCKVDQIDEAFRLFHNLLLDGVVANNVTYNTLIHALLRRGAFQEALTLVNDMLFRGCILDKITYNGLIKAFCKAGNVEKGLELYEKMIMDGLNADTISCNILINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVINGLCKVGRIREALNLFDRLQVEGVRPDAFTYNTFISWHCKEGMVNDACLFFYRGIENGFVPSNVTWNVLVNTLVKQSHENMFFVSDEF 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5553111 5555306 - CmoCh18G005960.1 Cmo18g00596 402369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00596 731 Pfam PPR repeat 596 625 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat 318 349 IPR002885 -
Cmo18g00596 731 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 74 723 - -
Cmo18g00596 731 PANTHER OS10G0368902 PROTEIN 74 723 - -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Cmo18g00596 731 SUPERFAMILY HCP-like 476 662 - -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 352 455 IPR011990 GO:0005515
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 602 636 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 532 565 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 637 671 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 672 705 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 462 495 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
Cmo18g00596 731 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat family 530 578 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat family 389 438 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat family 460 508 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat family 186 230 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat family 252 301 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat family 634 678 IPR002885 -
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 67 210 IPR011990 GO:0005515
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 593 662 IPR011990 GO:0005515
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 212 282 IPR011990 GO:0005515
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 456 523 IPR011990 GO:0005515
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 283 351 IPR011990 GO:0005515
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 663 728 IPR011990 GO:0005515
Cmo18g00596 731 Gene3D Tetratricopeptide repeat domain 524 592 IPR011990 GO:0005515
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 389 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Cmo18g00596 731 Pfam PPR repeat 358 380 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cmo18g00596 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01021 Cmo-Chr7:5058503 Cmo18g00596 Cmo-Chr18:5553111 1.27E-11 dispersed
Cmo18g00596 Cmo-Chr18:5553111 Cmo04g00287 Cmo-Chr4:1444475 2.28E-26 dispersed
Cmo06g00543 Cmo-Chr6:2630157 Cmo18g00596 Cmo-Chr18:5553111 4.97E-14 transposed
Cmo07g00019 Cmo-Chr7:105934 Cmo18g00596 Cmo-Chr18:5553111 2.55E-49 transposed
Cmo08g01257 Cmo-Chr8:7924756 Cmo18g00596 Cmo-Chr18:5553111 3.27E-19 transposed
Cmo13g01181 Cmo-Chr13:9394437 Cmo18g00596 Cmo-Chr18:5553111 7.75E-49 transposed
Cmo14g00723 Cmo-Chr14:3707152 Cmo18g00596 Cmo-Chr18:5553111 5.93E-45 transposed
Cmo18g00756 Cmo-Chr18:9199406 Cmo18g00596 Cmo-Chr18:5553111 2.23E-07 transposed
Cmo13g00406 Cmo-Chr13:5147273 Cmo18g00596 Cmo-Chr18:5553111 9.83E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00596 - - csv:101217894 1314.29