Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00596 | ATGTATACTTCTTTTGGAAACATTGTTAAACGGACCAAAAATCTTTGTTCTTTGGAGCCTAAGATTATTAATCATATTGAGAACTCTTGCAAATCTAGCTTCTTAGCTGGGAATATTGGAGATGGAAGTGGTTGTCCAACCAAGATGAATATTGAATCAGAGCGTGAAACCGAATGGGAGAGTTTACTAGAACCTTTTGATCTCACAAAGCTTAGAAAGTCTCACATTCTGATTACCCCTGTTCAACTATGCAAATTGCTTGAGCTTCCACTTGATGTGCCCACATTGTTGGAAATATTTGAACGGGTGGGTGCCCAAAAGGGTTATTGCCATACATTTGATGTATACTATGTGCTAATAAATAAGCTTGGAACAATTGGGGAGTTCAAGGTTATAGATAAACTGTTAACACAGATGAAAGAAGAAGGGATTGTTTTTCGAGAGTCCATTTTCATGATCATTATGAAACATTATGGGAAAGCTGGACAACCTGGACAGGCAATTCGATTGCTCCTAGATATGAGAGCTGTTTATTCATGTGAATCAACTTTTGAATCTTATAATGTAGTTTTGGAAACACTCGTGACGGGCAATTGTCCAAAAGTTGCTACGAATGTTTATTATGACATGTTGAGTAAGGGTATTTCTCCTACTGTTTTTACTTTTGGCATTGTGATGAAAGCTCTTTGTATGATTAATGAGGTCGACTCTGCATGCTCACTCCTTAGAGACATGACAAAGCATGGATGTGTACCGAATTCTATAGTTTATCAGACGTTAATACATGCGCTATCCAAAAATAACCAAGTTAGTGAAGCGTTAAAGCTTTTAGAAGAAATGTTTGTTATGGGATGCATGCCTGATGTTCAAACCTTCAATGATGTTATTCATGGCCTCTGCAAGGTAAATAAAATTCAAGATGCAGCAAAATTGGTTGATCGAATGCTTCTTCGAGGTTTTAACCCAGATAGTATGACTTATGGTTTTCTGTTGCATGGATTATGTAGGATTGGAAAACTCAATGAAGCAAGAGCATTATTGAACAAAATTCCTTGTCCAAATAATGCGATCTTGAATACGTTAATCAATGGGTATGTTATGAGTGGACGACTTAAGGAAGCTCAAAGCTTTCTTAATGAGACTATGATAAACTTTGGTTTTGACCCTGATATTTTTACATACAACATCTTGATGCATGGGCTTTGCAAAGAGGGGAGTCTTGGTTTTGCTCGTGATTTGGTTAATGAGATGTCTAGGAGGGGTTGCAAGCCGAATGTGATCACATATGCAATATTGATTGATGGGCTTTGTAAAGCTGGGTGTCTTGAAGAGGCTGGTCTTGTTTTACATGAGATGTCAACAAAGGGATTGACTATAAATACAGTTATATACAATTGCTTGATATGCGCCCTATGTAGGAATGAGAAGGTTCATGCTGCTTTAAATCTGTTTCGTGAAATGCCCACGAAAGGTTGCAAGCCCGACTTATTTACATACAATTCTCTAATCTTTGGATTGTGCAAGGTTGATCAGATTGATGAAGCCTTCAGGTTGTTTCATAATTTGTTATTGGACGGTGTTGTTGCCAACAACGTGACTTACAATACACTGATTCATGCACTTTTGAGGAGAGGTGCATTCCAAGAAGCGCTTACACTTGTTAATGATATGTTGTTCAGAGGCTGCATCCTCGATAAGATTACTTACAATGGACTGATAAAAGCGTTTTGCAAAGCTGGGAATGTTGAAAAAGGATTGGAATTATACGAGAAAATGATAATGGATGGACTTAACGCTGATACAATATCGTGTAATATTCTCATCAACGGGCTCTGTAAAGTTGGAAAAGTGGACAATGCATTTGAGTTTCTAAGAGATGCGATTAATCGAGGTTTCGTGCCTGACATAGTCACATATAACAGCGTTATAAATGGACTTTGCAAGGTTGGACGTATCAGGGAAGCCTTAAATCTATTTGATAGATTACAAGTCGAAGGTGTTCGCCCTGATGCTTTTACGTATAATACTTTTATCAGTTGGCACTGTAAAGAAGGCATGGTGAATGATGCTTGTTTATTTTTTTATAGAGGTATAGAGAATGGTTTTGTACCTAGTAATGTGACTTGGAATGTGCTGGTCAATACTTTGGTAAAACAAAGTCACGAGAATATGTTTTTCGTGTCAGATGAGTTCTGA | 2196 | 37.52 | MYTSFGNIVKRTKNLCSLEPKIINHIENSCKSSFLAGNIGDGSGCPTKMNIESERETEWESLLEPFDLTKLRKSHILITPVQLCKLLELPLDVPTLLEIFERVGAQKGYCHTFDVYYVLINKLGTIGEFKVIDKLLTQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYSCESTFESYNVVLETLVTGNCPKVATNVYYDMLSKGISPTVFTFGIVMKALCMINEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSKNNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIQDAAKLVDRMLLRGFNPDSMTYGFLLHGLCRIGKLNEARALLNKIPCPNNAILNTLINGYVMSGRLKEAQSFLNETMINFGFDPDIFTYNILMHGLCKEGSLGFARDLVNEMSRRGCKPNVITYAILIDGLCKAGCLEEAGLVLHEMSTKGLTINTVIYNCLICALCRNEKVHAALNLFREMPTKGCKPDLFTYNSLIFGLCKVDQIDEAFRLFHNLLLDGVVANNVTYNTLIHALLRRGAFQEALTLVNDMLFRGCILDKITYNGLIKAFCKAGNVEKGLELYEKMIMDGLNADTISCNILINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVINGLCKVGRIREALNLFDRLQVEGVRPDAFTYNTFISWHCKEGMVNDACLFFYRGIENGFVPSNVTWNVLVNTLVKQSHENMFFVSDEF | 731 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 5553111 | 5555306 | - | CmoCh18G005960.1 | Cmo18g00596 | 402369 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00596 | 731 | Pfam | PPR repeat | 596 | 625 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat | 318 | 349 | IPR002885 | - | |
| Cmo18g00596 | 731 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 74 | 723 | - | - | |
| Cmo18g00596 | 731 | PANTHER | OS10G0368902 PROTEIN | 74 | 723 | - | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 288 | 322 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 670 | 704 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 565 | 599 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 495 | 529 | IPR002885 | - | |
| Cmo18g00596 | 731 | SUPERFAMILY | HCP-like | 476 | 662 | - | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 425 | 459 | IPR002885 | - | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 352 | 455 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 602 | 636 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 532 | 565 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 637 | 671 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 672 | 705 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 291 | 324 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 392 | 426 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 254 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 497 | 530 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 427 | 460 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 462 | 495 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 567 | 600 | IPR002885 | - | |
| Cmo18g00596 | 731 | TIGRFAM | PPR: pentatricopeptide repeat domain | 256 | 289 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat family | 530 | 578 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat family | 389 | 438 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat family | 460 | 508 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat family | 186 | 230 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat family | 252 | 301 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat family | 634 | 678 | IPR002885 | - | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 67 | 210 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 593 | 662 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 212 | 282 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 456 | 523 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 283 | 351 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 663 | 728 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | Gene3D | Tetratricopeptide repeat domain | 524 | 592 | IPR011990 | GO:0005515 | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 354 | 389 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 600 | 634 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 460 | 494 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 530 | 564 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 635 | 669 | IPR002885 | - | |
| Cmo18g00596 | 731 | Pfam | PPR repeat | 358 | 380 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Cmo18g00596 | 731 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 390 | 424 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00596 | - | - | - | csv:101217894 | 1314.29 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g01021 | Cmo-Chr7:5058503 | Cmo18g00596 | Cmo-Chr18:5553111 | 1.27E-11 | dispersed | |
| Cmo18g00596 | Cmo-Chr18:5553111 | Cmo04g00287 | Cmo-Chr4:1444475 | 2.28E-26 | dispersed | |
| Cmo06g00543 | Cmo-Chr6:2630157 | Cmo18g00596 | Cmo-Chr18:5553111 | 4.97E-14 | transposed | |
| Cmo07g00019 | Cmo-Chr7:105934 | Cmo18g00596 | Cmo-Chr18:5553111 | 2.55E-49 | transposed | |
| Cmo08g01257 | Cmo-Chr8:7924756 | Cmo18g00596 | Cmo-Chr18:5553111 | 3.27E-19 | transposed | |
| Cmo13g01181 | Cmo-Chr13:9394437 | Cmo18g00596 | Cmo-Chr18:5553111 | 7.75E-49 | transposed | |
| Cmo14g00723 | Cmo-Chr14:3707152 | Cmo18g00596 | Cmo-Chr18:5553111 | 5.93E-45 | transposed | |
| Cmo18g00756 | Cmo-Chr18:9199406 | Cmo18g00596 | Cmo-Chr18:5553111 | 2.23E-07 | transposed | |
| Cmo13g00406 | Cmo-Chr13:5147273 | Cmo18g00596 | Cmo-Chr18:5553111 | 9.83E-24 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g96 | . | . | . | . | . | . | . | . | . | Cmo18g00596 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0014444 | 1 | 2 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 20 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cmo18g00596 | Cmo_Chr18 | FPKM | 1.81457 | 2.224608 | 5.732597 | 5.075885 | 2.436005 | 1.165157 | 1.516899 | 3.4416 | 3.28248 | 4.565828 |