Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00599 ATGGCGGAAAATGTTTCTCTCGAGGAGTTCCTAGGAACTGCAGTCGATGCCGCTAAGAAAGCCGGAGAGGTAATTCGTAAGGGATTCTATCAGACCAAGCATATAGAGCACAAAGGGCAGGTTGACTTGGTCACTGAAACTGACAAGGCTTGTGAAGATCTCATATTTAATTATCTCAAGGACCATTACCCTTCACATAAGTTCATTGGGGAAGAAACTACTGCTGCTTTTGGTCATACTGAGTTAACCGATGAACCAACGTGGATTGTCGATCCTCTTGATGGAACTACAAACTTTGTTCATGGGTTCCCTTTTGTGTGTGTTTCTATTGGTCTGACCATTGGAAAGGTTCCCACGGTTGGAGTCGTCTACAATCCAATTATTGATGAGCTTTTTACTGGAATTCGTGGAAAAGGTGCCTTCCTTAATGGTAGGCCTATTAAAGTATCCTCCCAAGACGAATTGTTGAAGTCTCTTCTTGTATCTGAGGTTGGGACCAAACGTGACAAGTCGACTGTAGATGCTACTACAGACAGAATTAATCGTTTGCTTTTGAAGGTGAGATCAATTCGGATGAGTGGTTCCTGTGCGCTGAACCTCTGTGGGGTAGCCTGTGGAAGGATCGATTTGTTTTTCGAAACTGGTTTTGGAGGTCCCTGGGATGTCGCTGCTGGAGCTGTTATTGTCACCGAAGCTGGTGGGCTCGTGTTTGATCCATCTGGCGAGGATTTTGACATAACATCACAGAGGGTAGCAGCTTCCAATCCTGTTGTGAAAGATGCATTTGTGGAGGCTTTGGGGATGTAA 807 44.98 MAENVSLEEFLGTAVDAAKKAGEVIRKGFYQTKHIEHKGQVDLVTETDKACEDLIFNYLKDHYPSHKFIGEETTAAFGHTELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKVPTVGVVYNPIIDELFTGIRGKGAFLNGRPIKVSSQDELLKSLLVSEVGTKRDKSTVDATTDRINRLLLKVRSIRMSGSCALNLCGVACGRIDLFFETGFGGPWDVAAGAVIVTEAGGLVFDPSGEDFDITSQRVAASNPVVKDAFVEALGM 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5597727 5601988 - CmoCh18G005990.1 Cmo18g00599 402372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00599 268 CDD IMPase 10 255 IPR033942 GO:0008934|GO:0046855
Cmo18g00599 268 Gene3D - 1 146 - -
Cmo18g00599 268 ProSitePatterns Inositol monophosphatase family signature 1. 88 101 IPR020583 -
Cmo18g00599 268 PRINTS Inositol monophosphatase superfamily signature 42 62 IPR000760 GO:0046855
Cmo18g00599 268 PRINTS Inositol monophosphatase superfamily signature 64 80 IPR000760 GO:0046855
Cmo18g00599 268 PRINTS Inositol monophosphatase superfamily signature 88 104 IPR000760 GO:0046855
Cmo18g00599 268 PRINTS Inositol monophosphatase superfamily signature 137 160 IPR000760 GO:0046855
Cmo18g00599 268 PRINTS Inositol monophosphatase superfamily signature 185 206 IPR000760 GO:0046855
Cmo18g00599 268 PRINTS Inositol monophosphatase superfamily signature 217 241 IPR000760 GO:0046855
Cmo18g00599 268 PANTHER INOSITOL MONOPHOSPHATASE 3 1 266 - -
Cmo18g00599 268 Gene3D - 148 267 - -
Cmo18g00599 268 Pfam Inositol monophosphatase family 7 262 IPR000760 GO:0046855
Cmo18g00599 268 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 21 40 IPR020552 GO:0046854
Cmo18g00599 268 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 139 157 IPR020552 GO:0046854
Cmo18g00599 268 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 162 172 IPR020552 GO:0046854
Cmo18g00599 268 PANTHER INOSITOL MONOPHOSPHATASE 1 266 - -
Cmo18g00599 268 SUPERFAMILY Carbohydrate phosphatase 7 266 - -
Cmo18g00599 268 ProSitePatterns Inositol monophosphatase family signature 2. 220 234 IPR020550 GO:0046854
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00599 K10047 VTC4; inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase [EC:3.1.3.25 3.1.3.93] - csv:101217972 506.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01784 Cmo18g00599 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00604 Cmo-Chr3:5714734 Cmo18g00599 Cmo-Chr18:5597727 2.42E-154 dispersed
Cmo18g00599 Cmo-Chr18:5597727 Cmo20g00837 Cmo-Chr20:4178136 2.10E-19 dispersed
Cmo13g00419 Cmo-Chr13:5205366 Cmo18g00599 Cmo-Chr18:5597727 1.22E-30 wgd
Cmo13g00404 Cmo-Chr13:5118586 Cmo18g00599 Cmo-Chr18:5597727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g46 Blo01g00452 Blo16g01090 . . . . . . Cmo04g01784 Cmo18g00599 . Cma18g01108 . Car18g01022 Sed06g1772 Cpe09g00219 Cpe01g01504 Bhi07g01497 Tan04g1010 Cmetu10g0153 Lac13g0372 Hepe10g1792 . . Cla05g02394 . . Cco05g2642 Clacu05g2571 Cmu05g2427 Cre05g2544 Cone13ag0909 Cone19ag0903 Cone6ag0530 Cone9ag0544 Lsi04g00365 . . Cme10g00360 . . . . . Bpe02g02316 Bma01g00121 Bma06g00735 . . . Cma04g01699 . Car04g01736 . . Cpe07g00085 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002208 0 5 1 1 1 2 4 2 2 2 2 2 2 2 2 3 2 1 3 2 2 2 2 2 2 3 2 4 3 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00599 Cmo_Chr18 FPKM 10.92263 9.666793 7.712825 7.55322 13.703131 14.711427 13.859354 4.157262 5.019674 4.948769