Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00610 ATGGAAATTAGAGGAAAGGAAGAAGTCAATGAAAATTCCTTGAACTCTATAGATCTTGAGAAGAAAACATCTGAATGTGGGAGTGGGAAGGATAGTTCTGCTTCTGCCAAAGTCAATGATGGAACAAACAGTCTTGCCAAGACTAGTGGGAGCGCGAAAGTTAGTGACCGTGTTGAGATGGTCGAAAGTGGTAAGAGTAGTATATGTCGAGGAAGTACGAGTAGCGATATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGCAAGCCTCACAAATCAAATGACTTGAGATGGGAGGCTATCCAAGCTGTACGTGCAAGGGATGGGATGTTGGGATTAGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGCGATATCGGAAGTGTCTACTTGTCGGAATTGAGTGGCACTAAGTGTTATTTTGCAATGAAGGTTATGGACAAAGGGTCTCTGGCTAGTCGGAAGAAGTTGCTTCGTGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTGTATACACATTTTGAGACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTACACACTCTAAGGCAGAGACAGCCGGGGAAGTATTTTCCCGAACAAGCGGTGAAATTTTACGTAGCGGAGGTCCTCCTAGCACTCGAGTATCTTCACATGCTTGGGATTGTATATCGGGACCTTAAGCCCGAGAATGTTCTTGTGAGGGAAGACGGACACATTATGCTTTCAGACTTCGATCTTTCCCTAAGATGTGCTGTTAGTCCAACATTAGTGAAGGGCTCATGTTCTGAGTCCGAATCCTTACGAAAGAATTCAGCTTACTGTGCCCAGCCAGCTTGTATCGAGCCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACGTCGTGTTTTACTCCCCGACTTTTCTCTAGCAAGTCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGTAACCAGGTAACACCATTGCCAGAGCTGATTGCAGAGCCGACGGAGGCGAGGTCAATGTCATTTGTTGGTACACATGAGTACTTGGCACCCGAGATCATTAAAGGCGAAGGTCACGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAAGGATCTGGGAATCGGGCGACGTTGTTCAACGTCGTTGGTCAGCCATTGCGGTTTCCAGATTCCCCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTCGTCAAGGAACCACAGCATAGGTTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACACCCGTTCTTTGAAGGTGTTAACTGGGCGTTGATACGATGTGCTTCGCCACCAGACGTACCGAAGCCTGTTGAGATCGAGAGGATACCATCACCAGCACCTCCAGTCAGTGGAAAAGCAGTGATGGCTACCAGACCTGCTCCCGATTCCAAATCATCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1545 46.28 MEIRGKEEVNENSLNSIDLEKKTSECGSGKDSSASAKVNDGTNSLAKTSGSAKVSDRVEMVESGKSSICRGSTSSDISDESTCSSFSSSISKPHKSNDLRWEAIQAVRARDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESESLRKNSAYCAQPACIEPSCIQPSCVVPTSCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPDSPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPDVPKPVEIERIPSPAPPVSGKAVMATRPAPDSKSSDNYLEFDFF 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7402842 7406513 - CmoCh18G006100.1 Cmo18g00610 402383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00610 514 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 11 514 - -
Cmo18g00610 514 PIRSF ILK 337 445 - -
Cmo18g00610 514 PIRSF ILK 4 72 - -
Cmo18g00610 514 PIRSF ILK 131 303 - -
Cmo18g00610 514 MobiDBLite consensus disorder prediction 481 507 - -
Cmo18g00610 514 Gene3D Phosphorylase Kinase; domain 1 117 202 - -
Cmo18g00610 514 MobiDBLite consensus disorder prediction 1 15 - -
Cmo18g00610 514 MobiDBLite consensus disorder prediction 66 89 - -
Cmo18g00610 514 Pfam Protein kinase domain 120 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00610 514 Pfam Protein kinase domain 353 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00610 514 MobiDBLite consensus disorder prediction 16 51 - -
Cmo18g00610 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Cmo18g00610 514 Gene3D Transferase(Phosphotransferase) domain 1 350 473 - -
Cmo18g00610 514 Gene3D Transferase(Phosphotransferase) domain 1 203 271 - -
Cmo18g00610 514 MobiDBLite consensus disorder prediction 1 89 - -
Cmo18g00610 514 ProSiteProfiles Protein kinase domain profile. 119 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00610 514 SMART serkin_6 119 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00610 514 PANTHER FLIPPASE KINASE 1-RELATED 11 514 - -
Cmo18g00610 514 CDD STKc_phototropin_like 118 479 - -
Cmo18g00610 514 SUPERFAMILY Protein kinase-like (PK-like) 91 485 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00110 Cmo-Chr3:1547262 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo06g00965 Cmo-Chr6:7557283 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo07g00355 Cmo-Chr7:1640794 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo07g01328 Cmo-Chr7:7501805 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo11g01662 Cmo-Chr11:11792207 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo13g00335 Cmo-Chr13:4328573 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo14g00690 Cmo-Chr14:3558241 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo14g02239 Cmo-Chr14:15877005 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo18g00610 Cmo-Chr18:7402842 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo18g00610 Cmo-Chr18:7402842 Cmo03g00624 Cmo-Chr3:5785792 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75062 PF00069 Pkinase 6.70E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00610 K08286 - csv:101213662 938.332