Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00627 ATGGAAATGAGGGATTACAATTTGGGGCTCTGTATCTCTCTGGTTTTGTTATGCACATCAACTGTTTGTTTTTGTGCCACTGACCTAAATGATGTCAAAATCTTGAATGACTTAAGAATGGGGTTAGAAAATTCAGAGCTTCTCAAATGGCCTGACAATGGAGATGACCCATGTGGGATTCCTCCATGGCCTCATGTTTATTGTGCAGGTGATAGAGTTTCTCAGATTCAGGTTCAGGGCTTGGGTCTAAAAGGACCCTTGCCTCAGAATCTTAACCAGTTATCTAAGCTCTCAAACTTGGGTCTCCAAAAGAACAAGTTCAATGGGGCATTGCCCTCTTTCAGTGGCTTATCAGAGCTGGAATTTGCTTACTTAGATTTCAATGAGTTCGACACGATCCCTTTAGATTTCTTCAATGGATTAACCAACATTAGGGTATTGGCTTTGGATTATAATCCTTTCAATGCCACTGCTGGATGGTCTCTACCTGATGAGCTTGCTAAGTCGGTTCAGCTGACGAATCTTTCACTGGTTCACAGCAATCTAGTTGGGCCTGTCCCTGAGTTTTTGGGGACATTGCCATCATTGACAGCTTTGAAGCTTTCTTACAACCGGTTAACTGGCCCAATTCCTGAGAGTTTTGGGCAGTCTTTGATGCAGATTCTATGGCTGAATGATCAGGATACCGGAATGACCGGTTCGATCGATGTTGTTCCGTTGATGACTTCTTTGACTCAGCTATGGCTACATGGAAACAAATTCTCAGGGGTGATCCCTGAAAATATTGGGGAGCTAGCAGCTTTGTCTGATCTTAATCTCAATAGAAACCAACTTGTTGGTCTGGTTCCTGAGAGCTTGGCCAAGATGAACCTTGACAATCTGGTCCTCAATAATAACTTTCTAATGGGTCCGATACCGGAGTTCGAGGCTCGTAATGTTACTTATGATTACAACTATTTTTGTCAGTCTAAACCAGGTCTACAATGTGCCCCAGAAGTTACTGCACTTTTGCATTTTCTTGGCAGTCTGAACTATCCTATACGTCTTGCATCGGAGTGGTCGGGTAATGATCCATGCCAAGGGCCTTGGTTGGGACTTAGTTGCAATCCTGAGTCCAAGGTTTCGATGATCAATCTGCCCAAGCGAGGACTTCTTGGTACTTTGAGTCCTTCTATATCAAACCTAGATTCGTTGATCGAAATTCGATTGGCTGGCAATAATATTAGTGGTATAGTTCCTCAGAATTTTACGAGTTTGAAATCTTTGAGGTTGTTGGATTTGACTGGAAACAATTTCGACCCTCCTTTACCGAAATTTCGAGACGATGTTAAAGTTTTAACGTTGGGAAATCCTTTTTTGGTTTCTAATCATTCTGCAGTGCCTCCTTTACCGATTACACATCCACCACTTACCAGTGTGTCGCCTCCCCTAGACGATCCCTCAGGTGATGCGTCATCGAGGAGTCCAGTTCCTGGATCTCCAATTACAGTAAGGAATTCCTCTTCATCTGTCCATGTTGAATCCGAGATGCAAAAGTCTTCAAAGACGAGAAGAATTATGTACGTGGTTGCCACGGTTCTCATTATAGTCATGATATTTCTATCAGCATTGTTCTGTATCTTCTGCTTTAGGAGGAGAAAACGAGCTGCCGAATCTCCAACTTTTGTGGTGCACCCGAAAGATCCCTCGTACCCTGAAAGCATGGTTAAGATTTCTGTGTCGAATAAGAACACAGGAAACGTATCAAATCAAACGGGAACTAGCATGACAAGTACTAATAGTGGTGGAACTGAGAGTTCTCATGTGATTGAGGATGGGAATTTGGTTGTAGCTGTTCAAGTTCTCCGCAAGGTGACCAATAATTTTTCCCTCGAAAATGAGCTCGGCCGAGGTGGCTTTGGAACGGTCTATAAAGGTGAGTTGGAGGACGGAACGAAAATAGCAGTGAAGAGAATGGAGGCTGGATCGATCAGTAATAAAGCAATAGAAGAGTTTCAATCCGAAATTGCAGTTCTTTCGCATGTTAGACATCGACATTTGGTATCGCTTTTGGGGTATTCTATAGAAGGAGCTGAAAGGCTTCTTGTATATGAGTATATGTCTCAAGGTGCTCTTAGCAAGCATCTCTTCCATTGGAAAAGTTTTAAATTGGAGCCTCTACCTTGGATGACTCGGCTGACGATTGCGCTCGATGTTGCCCGGGGAATTGAATATCTACATGGTTTAGCCCGACAAACCTTCATACATCGAGATCTTAAATCGTCTAATATTCTTCTGGACGATGATTTTCGAGCAAAAGTTTCAGATTTTGGACTCGTGAAGTTGGCTCCAGATGGGGAGAAGTCTGTAGCAACTAAGCTTGCTGGTACATTTGGATACCTAGCACCTGAGTATGCAGTTCTTCAATTTTCTGAAATCTTGTTGTTCTTAAATTTGTGTGGGGATTCAGTGATGGGGAAGATCACTACGAAAGCTGATGTATTCAGTTTCGGCGTGGTGCTAATGGAGCTTTTGACTGGAATGATGGCATTGGACGAGGAGCGGCCGGAGGAAAGCCGGTACTTGGCCGAATGGTTTTGGCGAATCAAGTCGAACAAAGAAAAGCTAATGTCTGCGATCGATCCATCTCTACCGGTAAACGCCAACCTGTTCGAGAAGATCTTCATAATCGCAGAATTGGCAGGACATTGCACAGCTAGAGAGCCAACTCATCGGCCCGACATGGGACATGTGGTGAACGTGCTTTCGCCTTTGATCGAGAAGTGGAAACCAATTGACGACGATGCGGATAGTTTGTCGGGGATTGATTACAGTCTACCGCTTCCTGAAATGCTAAAGGTATGGCAGGAAGCAGAAAGCGGGGACACGAAGTTTACGAGCCTTCAAGACAGTAAGGGAAGCATTCCGGCCCGACCCACCGGATTTGCAGACTCCTTCACCTCTGTTGATGGAAGATGA 2958 44.08 MEMRDYNLGLCISLVLLCTSTVCFCATDLNDVKILNDLRMGLENSELLKWPDNGDDPCGIPPWPHVYCAGDRVSQIQVQGLGLKGPLPQNLNQLSKLSNLGLQKNKFNGALPSFSGLSELEFAYLDFNEFDTIPLDFFNGLTNIRVLALDYNPFNATAGWSLPDELAKSVQLTNLSLVHSNLVGPVPEFLGTLPSLTALKLSYNRLTGPIPESFGQSLMQILWLNDQDTGMTGSIDVVPLMTSLTQLWLHGNKFSGVIPENIGELAALSDLNLNRNQLVGLVPESLAKMNLDNLVLNNNFLMGPIPEFEARNVTYDYNYFCQSKPGLQCAPEVTALLHFLGSLNYPIRLASEWSGNDPCQGPWLGLSCNPESKVSMINLPKRGLLGTLSPSISNLDSLIEIRLAGNNISGIVPQNFTSLKSLRLLDLTGNNFDPPLPKFRDDVKVLTLGNPFLVSNHSAVPPLPITHPPLTSVSPPLDDPSGDASSRSPVPGSPITVRNSSSSVHVESEMQKSSKTRRIMYVVATVLIIVMIFLSALFCIFCFRRRKRAAESPTFVVHPKDPSYPESMVKISVSNKNTGNVSNQTGTSMTSTNSGGTESSHVIEDGNLVVAVQVLRKVTNNFSLENELGRGGFGTVYKGELEDGTKIAVKRMEAGSISNKAIEEFQSEIAVLSHVRHRHLVSLLGYSIEGAERLLVYEYMSQGALSKHLFHWKSFKLEPLPWMTRLTIALDVARGIEYLHGLARQTFIHRDLKSSNILLDDDFRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVLQFSEILLFLNLCGDSVMGKITTKADVFSFGVVLMELLTGMMALDEERPEESRYLAEWFWRIKSNKEKLMSAIDPSLPVNANLFEKIFIIAELAGHCTAREPTHRPDMGHVVNVLSPLIEKWKPIDDDADSLSGIDYSLPLPEMLKVWQEAESGDTKFTSLQDSKGSIPARPTGFADSFTSVDGR 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8011555 8015739 - CmoCh18G006270.1 Cmo18g00627 402400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00627 985 MobiDBLite consensus disorder prediction 478 509 - -
Cmo18g00627 985 Gene3D Phosphorylase Kinase; domain 1 582 699 - -
Cmo18g00627 985 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Cmo18g00627 985 MobiDBLite consensus disorder prediction 468 510 - -
Cmo18g00627 985 PANTHER OSJNBA0070M12.3 PROTEIN 9 985 - -
Cmo18g00627 985 Gene3D Ribonuclease Inhibitor 29 326 IPR032675 -
Cmo18g00627 985 MobiDBLite consensus disorder prediction 576 598 - -
Cmo18g00627 985 SUPERFAMILY L domain-like 330 439 - -
Cmo18g00627 985 Pfam Protein tyrosine and serine/threonine kinase 623 914 IPR001245 GO:0004672|GO:0006468
Cmo18g00627 985 Gene3D Transferase(Phosphotransferase) domain 1 700 932 - -
Cmo18g00627 985 MobiDBLite consensus disorder prediction 956 985 - -
Cmo18g00627 985 SUPERFAMILY L domain-like 56 311 - -
Cmo18g00627 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Cmo18g00627 985 ProSiteProfiles Protein kinase domain profile. 622 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00627 985 Pfam Leucine rich repeat 392 432 IPR001611 GO:0005515
Cmo18g00627 985 SUPERFAMILY Protein kinase-like (PK-like) 599 915 IPR011009 -
Cmo18g00627 985 CDD STKc_IRAK 628 918 - -
Cmo18g00627 985 SMART serkin_6 622 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00627 985 Pfam Leucine rich repeat N-terminal domain 331 369 IPR013210 -
Cmo18g00627 985 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cmo18g00627 985 PANTHER OSJNBA0070M12.3 PROTEIN 9 985 - -
Cmo18g00627 985 SMART LRR_typ_2 395 418 IPR003591 -
Cmo18g00627 985 SMART LRR_typ_2 265 288 IPR003591 -
Cmo18g00627 985 SMART LRR_typ_2 193 217 IPR003591 -
Cmo18g00627 985 SMART LRR_typ_2 141 169 IPR003591 -
Cmo18g00627 985 SMART LRR_typ_2 241 263 IPR003591 -
Cmo18g00627 985 SMART LRR_typ_2 117 140 IPR003591 -
Cmo18g00627 985 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00627 - - - cit:102609770 1345.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02234 Cmo18g00627 CCT
Cmo15g00927 Cmo18g00627 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00523 Cmo-Chr6:2512772 Cmo18g00627 Cmo-Chr18:8011555 0 dispersed
Cmo14g00355 Cmo-Chr14:1598259 Cmo18g00627 Cmo-Chr18:8011555 0 dispersed
Cmo15g00927 Cmo-Chr15:4719164 Cmo18g00627 Cmo-Chr18:8011555 0 dispersed
Cmo17g00446 Cmo-Chr17:3037122 Cmo18g00627 Cmo-Chr18:8011555 0 dispersed
Cmo13g00365 Cmo-Chr13:4687777 Cmo18g00627 Cmo-Chr18:8011555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001729 3 1 1 4 3 2 3 2 2 2 2 1 4 1 0 4 2 2 2 2 1 2 1 2 2 2 2 3 0 2 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75063 PF07714 PK_Tyr_Ser-Thr 2.50E-42 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00627 Cmo_Chr18 FPKM 5.575764 6.859012 5.295562 5.669742 11.897499 12.348851 12.166189 5.730076 5.625646 5.499384