Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00628 ATGATTGCCACGGACTTGAAAGGAGAGCCACAAAGCTTGAGATTATTCCAGAAGAACGGGTGTCCAAAGGCTTCTAATTTCGTAACAGGGAAGAAATTGAGGTTGAGAAAGTACACTACCGGCGTTGTTGCTCCTCGATCTGCTCCAGTTTGTGCCGCTGCTGACCCCAATAGACCCCTTTGGTTCCCTGGTAGCACCCCTCCTCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTTTGCGCTGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTTTGAACACTCCATCATGGTACACCGCTGGAGAATTGGAATACTTCACCGACACCACCACCCTCTTCGTCGTCGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATTCTCAAACCCGGCTGCGTCAACACCGACCCGATCTTCCCCAACAACAAGCTCACCGGAACGGACGTTGGGTACCCAGGAGGGCTGTGGTTCGACCCGCTCGGATGGGGTAGCGGGTCACCCGAAAAGATCAAGGAGTTGAGAACTAAAGAGATCAAGAACGGTCGATTGGCTATGTTGGCAGTGATGGGTGCATGGTTTCAACACATTTACACCGGCACCGGTCCCATCGACAATCTTTTCGCGCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTTACTCCCAAGTGA 723 54.08 MIATDLKGEPQSLRLFQKNGCPKASNFVTGKKLRLRKYTTGVVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLCAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8027006 8028654 + CmoCh18G006280.1 Cmo18g00628 402401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00628 240 Pfam Chlorophyll A-B binding protein 86 210 IPR022796 -
Cmo18g00628 240 Gene3D Chlorophyll a/b binding protein domain 59 87 - -
Cmo18g00628 240 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 25 87 IPR001344 GO:0009765|GO:0016020
Cmo18g00628 240 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 86 240 IPR001344 GO:0009765|GO:0016020
Cmo18g00628 240 Gene3D Chlorophyll a/b binding protein domain 88 230 - -
Cmo18g00628 240 SUPERFAMILY Chlorophyll a-b binding protein 53 238 - -
Cmo18g00628 240 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 25 87 - -
Cmo18g00628 240 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 86 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00756 Cmo-Chr11:3676214 Cmo18g00628 Cmo-Chr18:8027006 2.97E-78 dispersed
Cmo12g00495 Cmo-Chr12:3032893 Cmo18g00628 Cmo-Chr18:8027006 3.30E-39 dispersed
Cmo18g00628 Cmo-Chr18:8027006 Cmo01g00834 Cmo-Chr1:4452811 1.95E-51 dispersed
Cmo18g00628 Cmo-Chr18:8027006 Cmo04g01932 Cmo-Chr4:9872268 6.89E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00628 K08908 - csv:101214055 437.958