Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00647 | ATGGAGACTTACTTTAATCACAATCTGTTCGAGAGGCGTCCCATTGTGAAGAACAAGACTCCTGCTGCTAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTACTTTTGAAATGGGTCACAGAGGATACATTGAAGGCATTAAAGGAGAAGACAAAACAATCGGAGGCACCAGAACCTGAACCAGAACCCACAACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGAAGGTTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCGCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCTCACGAGTACAAATTGAAAAACCACATTACATCTCACCATGAAAAGAACATGACAGCTGAAGTGGTCAAATATACACCACCTACTGAGAAGCAAACTAAGGTTTCTAAACCATCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAACTTAAACTCCATTTAAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCATCATAATGGGGAAAATGAGATAGAAGGCAGTGATCAAGACGGGTATGGCGGTAAACGGGTAAATACGAAAAACCAGAAACAGAACAAGCCTAAACCAAAGTTGAAGTTACCACCTTCCAAAATATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTAGTGTAAAAAAACCATGGCCTGCTAAAGAAGAAACCTACGAGGAAGAAGATAGCGAAGAGACGGAGGAGGACCGAGAGAACGTGGAGGAGGGTTGGCAATATGCCGAAAACGAAGACGACGATGAGGAAACGGAGTATGAAGATTAA | 1110 | 42.43 | METYFNHNLFERRPIVKNKTPAAKWIKEWVPQDVVATGGKCLLLKWVTEDTLKALKEKTKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNMTAEVVKYTPPTEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAHHNGENEIEGSDQDGYGGKRVNTKNQKQNKPKPKLKLPPSKISQRKGTTPSPAPMSSVKKPWPAKEETYEEEDSEETEEDRENVEEGWQYAENEDDDEETEYED | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8136617 | 8141701 | - | CmoCh18G006470.1 | Cmo18g00647 | 402420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00647 | 369 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
Cmo18g00647 | 369 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
Cmo18g00647 | 369 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
Cmo18g00647 | 369 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 170 | IPR036236 | - | |
Cmo18g00647 | 369 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - | |
Cmo18g00647 | 369 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 229 | 256 | IPR013087 | - | |
Cmo18g00647 | 369 | Gene3D | Classic Zinc Finger | 203 | 272 | - | - | |
Cmo18g00647 | 369 | Gene3D | Classic Zinc Finger | 162 | 191 | - | - | |
Cmo18g00647 | 369 | MobiDBLite | consensus disorder prediction | 257 | 279 | - | - | |
Cmo18g00647 | 369 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
Cmo18g00647 | 369 | SUPERFAMILY | beta-beta-alpha zinc fingers | 224 | 252 | IPR036236 | - | |
Cmo18g00647 | 369 | MobiDBLite | consensus disorder prediction | 257 | 369 | - | - | |
Cmo18g00647 | 369 | MobiDBLite | consensus disorder prediction | 204 | 227 | - | - | |
Cmo18g00647 | 369 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
Cmo18g00647 | 369 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
Cmo18g00647 | 369 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
Cmo18g00647 | 369 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
Cmo18g00647 | 369 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
Cmo18g00647 | 369 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - | |
Cmo18g00647 | 369 | SUPERFAMILY | beta-beta-alpha zinc fingers | 160 | 193 | IPR036236 | - | |
Cmo18g00647 | 369 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
Cmo18g00647 | 369 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
Cmo18g00647 | 369 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
Cmo18g00647 | 369 | PANTHER | BNAA03G13270D PROTEIN | 5 | 368 | - | - | |
Cmo18g00647 | 369 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
Cmo18g00647 | 369 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 5 | 368 | - | - | |
Cmo18g00647 | 369 | MobiDBLite | consensus disorder prediction | 333 | 369 | - | - | |
Cmo18g00647 | 369 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 231 | 254 | IPR013087 | - | |
Cmo18g00647 | 369 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
Cmo18g00647 | 369 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
Cmo18g00647 | 369 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
Cmo18g00647 | 369 | SMART | c2h2final6 | 229 | 254 | IPR013087 | - | |
Cmo18g00647 | 369 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00647 | Cmo-Chr18:8136617 | Cmo04g01395 | Cmo-Chr4:7096447 | 1.76E-08 | dispersed | |
Cmo18g00647 | Cmo-Chr18:8136617 | Cmo13g00808 | Cmo-Chr13:7608227 | 9.81E-13 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11513 | PF00096 | zf-C2H2 | 0.0049 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00647 | - | - | mcha:111019807 | 652.514 |