Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00647 ATGGAGACTTACTTTAATCACAATCTGTTCGAGAGGCGTCCCATTGTGAAGAACAAGACTCCTGCTGCTAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTACTTTTGAAATGGGTCACAGAGGATACATTGAAGGCATTAAAGGAGAAGACAAAACAATCGGAGGCACCAGAACCTGAACCAGAACCCACAACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGAAGGTTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCGCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCTCACGAGTACAAATTGAAAAACCACATTACATCTCACCATGAAAAGAACATGACAGCTGAAGTGGTCAAATATACACCACCTACTGAGAAGCAAACTAAGGTTTCTAAACCATCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAACTTAAACTCCATTTAAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCATCATAATGGGGAAAATGAGATAGAAGGCAGTGATCAAGACGGGTATGGCGGTAAACGGGTAAATACGAAAAACCAGAAACAGAACAAGCCTAAACCAAAGTTGAAGTTACCACCTTCCAAAATATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTAGTGTAAAAAAACCATGGCCTGCTAAAGAAGAAACCTACGAGGAAGAAGATAGCGAAGAGACGGAGGAGGACCGAGAGAACGTGGAGGAGGGTTGGCAATATGCCGAAAACGAAGACGACGATGAGGAAACGGAGTATGAAGATTAA 1110 42.43 METYFNHNLFERRPIVKNKTPAAKWIKEWVPQDVVATGGKCLLLKWVTEDTLKALKEKTKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNMTAEVVKYTPPTEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAHHNGENEIEGSDQDGYGGKRVNTKNQKQNKPKPKLKLPPSKISQRKGTTPSPAPMSSVKKPWPAKEETYEEEDSEETEEDRENVEEGWQYAENEDDDEETEYED 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8136617 8141701 - CmoCh18G006470.1 Cmo18g00647 402420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00647 369 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Cmo18g00647 369 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Cmo18g00647 369 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Cmo18g00647 369 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Cmo18g00647 369 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Cmo18g00647 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Cmo18g00647 369 Gene3D Classic Zinc Finger 203 272 - -
Cmo18g00647 369 Gene3D Classic Zinc Finger 162 191 - -
Cmo18g00647 369 MobiDBLite consensus disorder prediction 257 279 - -
Cmo18g00647 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Cmo18g00647 369 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Cmo18g00647 369 MobiDBLite consensus disorder prediction 257 369 - -
Cmo18g00647 369 MobiDBLite consensus disorder prediction 204 227 - -
Cmo18g00647 369 Gene3D Classic Zinc Finger 77 102 - -
Cmo18g00647 369 Gene3D Classic Zinc Finger 134 161 - -
Cmo18g00647 369 MobiDBLite consensus disorder prediction 206 220 - -
Cmo18g00647 369 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Cmo18g00647 369 Gene3D Classic Zinc Finger 103 133 - -
Cmo18g00647 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cmo18g00647 369 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Cmo18g00647 369 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Cmo18g00647 369 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Cmo18g00647 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Cmo18g00647 369 PANTHER BNAA03G13270D PROTEIN 5 368 - -
Cmo18g00647 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Cmo18g00647 369 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 5 368 - -
Cmo18g00647 369 MobiDBLite consensus disorder prediction 333 369 - -
Cmo18g00647 369 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Cmo18g00647 369 SMART c2h2final6 77 101 IPR013087 -
Cmo18g00647 369 SMART c2h2final6 136 160 IPR013087 -
Cmo18g00647 369 SMART c2h2final6 166 190 IPR013087 -
Cmo18g00647 369 SMART c2h2final6 229 254 IPR013087 -
Cmo18g00647 369 SMART c2h2final6 106 130 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00647 Cmo-Chr18:8136617 Cmo04g01395 Cmo-Chr4:7096447 1.76E-08 dispersed
Cmo18g00647 Cmo-Chr18:8136617 Cmo13g00808 Cmo-Chr13:7608227 9.81E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11513 PF00096 zf-C2H2 0.0049 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00647 - - mcha:111019807 652.514