Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00662 ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGATCTCGGGATGAAGCCCAGATGAGACAGCAGCAGCAGCAGCAACAACAACAGCAATCTAATTCTTCGGGTGTGCCGCCACCGAAGAAAAAGAGGAACCAACCAGGAACACCGAGCAAGTATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACACTAATGGCAACCAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTTCATAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCAATAAAGAGCCAAAAAGGAAGGTGTATTTATGCCCAGAACCCACATGCGTCCATCACGACCCATCAAGAGCTCTTGGTGACTTAACAGGTATCAAAAAACACTACTCCAGAAAGCATGGGGAGAAGAAATGGAAGTGCGATAAGTGCTCTAAACGCTATGCCGTTCAGTCCGATTGGAAGGCCCATTCCAAAACCTGTGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTTTTCTCCAGACGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACATCCTACAAATTTAGGGTCAGCAATGGGAGGTCATTTATATGGAGGTAATAGCAATGTGGGGTTAACATTATCACAAGTTCCTCAAATGTCATCTCTTCAAGATATTCCCAATATAACCCAATCCGACGTCCTCCGCCTTGGCGGCGGAGGACGAACCGGGCAGTTCAATCATCTTCTTCCTCCGTCTATCGGCTCGTCGTTTCGACCACCACCGCAACAAGCAATGCCGTCTTCGGCTGCGGCTGCGGCGTTCTTCTTGAATGATCAAACTAGCCAGAATAGCTTCCATGAGGATCATGGAAGTCAATCTCAACAAGGGTTGTTTGGAAACAAGGCTTTTCATGGATTAATGCAATTTTCTGATATGCAAAGTCATACGAGTAATAGTAACAACCCTTCCTCAAATCTCTTCAATTTGGGGTTCATTTCGAACCCGACTGGTGATAGTACGACGAATATGAACAACAACAACAACACCAACAGTAATAATACGAGTAATAGCAACAACAACAGCAACAGCAACAACAACAATCTTCAATCGTCTTTGCTTAATCAATTCAATGGCACGAACAATGGCAACAATGAAGGTGGTGCATCAAACATTTTCTCAATGATGGGCGATCAAATGAATTCAGGTGCAGTCCCGTCTCTCTATAGCAACACGACGGGAGTCGGCGGTAGCGGTACGAGCGGAGCAATTGCACACATGTCAGCAACGGCGCTTCTCCAAAAGGCAGCTCAATTAGGCTCAACAACGTCAAGTAGCAACACAACAGCGACATTGCTACGATCATTTGGAAGCTCGTCAACTTCCGGTGGGAAAGCATCCGACAGGACGCTTTTCCCACCGAGCTACGGCGGAGTATTCGGTGAAAATGAGAGCAATCTTCAAGATCTAATGAATTCATTCACCACCGGAAGCTCAGCAGGCGGGCTCTTCGGTGGTGGAATGAGCTCATTCGGTACATTTGACGGCGGAAACAATAGACCAAACAACATGGAAACATTGGAAGATCCGAAACTACAACAAAATCTAAGCTCAGTTAGCATGGGAGGAACAGATAGATTAACAAGAGACTTCCTAGGTGTTGGACAAATTGTAAGAAGTATGAGTAGCGGAGGAGGAGGAGGAGGAGGCAGCGGTGGCGGTGGTTATTCGCAACGAGAACATAAACAACCGCCGCAAGGGATCGTTATGGAGGGAAATGAGAGCAATTCAGCTGCATCAAGCCAAGCATTTGGTGGTGGAGGAAATGGAAACTACCAGTGA 1884 46.02 MAASSSSVPLFGSRDEAQMRQQQQQQQQQQSNSSGVPPPKKKRNQPGTPSKYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAMGGHLYGGNSNVGLTLSQVPQMSSLQDIPNITQSDVLRLGGGGRTGQFNHLLPPSIGSSFRPPPQQAMPSSAAAAAFFLNDQTSQNSFHEDHGSQSQQGLFGNKAFHGLMQFSDMQSHTSNSNNPSSNLFNLGFISNPTGDSTTNMNNNNNTNSNNTSNSNNNSNSNNNNLQSSLLNQFNGTNNGNNEGGASNIFSMMGDQMNSGAVPSLYSNTTGVGGSGTSGAIAHMSATALLQKAAQLGSTTSSSNTTATLLRSFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGTFDGGNNRPNNMETLEDPKLQQNLSSVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGGSGGGGYSQREHKQPPQGIVMEGNESNSAASSQAFGGGGNGNYQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8407004 8409497 + CmoCh18G006620.1 Cmo18g00662 402435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00662 627 MobiDBLite consensus disorder prediction 327 408 - -
Cmo18g00662 627 SMART c2h2final6 147 167 IPR013087 -
Cmo18g00662 627 SMART c2h2final6 112 142 IPR013087 -
Cmo18g00662 627 SMART c2h2final6 71 93 IPR013087 -
Cmo18g00662 627 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Cmo18g00662 627 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Cmo18g00662 627 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 578 - -
Cmo18g00662 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cmo18g00662 627 MobiDBLite consensus disorder prediction 572 627 - -
Cmo18g00662 627 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cmo18g00662 627 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 578 - -
Cmo18g00662 627 MobiDBLite consensus disorder prediction 603 627 - -
Cmo18g00662 627 MobiDBLite consensus disorder prediction 1 54 - -
Cmo18g00662 627 Gene3D Classic Zinc Finger 50 119 - -
Cmo18g00662 627 Gene3D Classic Zinc Finger 125 204 - -
Cmo18g00662 627 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01048 Cmo-Chr4:5233890 Cmo18g00662 Cmo-Chr18:8407004 0 dispersed
Cmo18g00662 Cmo-Chr18:8407004 Cmo08g00742 Cmo-Chr8:4706485 6.81E-108 dispersed
Cmo18g00662 Cmo-Chr18:8407004 Cmo14g00196 Cmo-Chr14:889620 1.85E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11514 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00662 K25870 - csv:116401647 808.905