Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00662 | ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGATCTCGGGATGAAGCCCAGATGAGACAGCAGCAGCAGCAGCAACAACAACAGCAATCTAATTCTTCGGGTGTGCCGCCACCGAAGAAAAAGAGGAACCAACCAGGAACACCGAGCAAGTATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACACTAATGGCAACCAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTTCATAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCAATAAAGAGCCAAAAAGGAAGGTGTATTTATGCCCAGAACCCACATGCGTCCATCACGACCCATCAAGAGCTCTTGGTGACTTAACAGGTATCAAAAAACACTACTCCAGAAAGCATGGGGAGAAGAAATGGAAGTGCGATAAGTGCTCTAAACGCTATGCCGTTCAGTCCGATTGGAAGGCCCATTCCAAAACCTGTGGTACTCGCGAGTATCGCTGCGATTGTGGCACTCTTTTCTCCAGACGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACATCCTACAAATTTAGGGTCAGCAATGGGAGGTCATTTATATGGAGGTAATAGCAATGTGGGGTTAACATTATCACAAGTTCCTCAAATGTCATCTCTTCAAGATATTCCCAATATAACCCAATCCGACGTCCTCCGCCTTGGCGGCGGAGGACGAACCGGGCAGTTCAATCATCTTCTTCCTCCGTCTATCGGCTCGTCGTTTCGACCACCACCGCAACAAGCAATGCCGTCTTCGGCTGCGGCTGCGGCGTTCTTCTTGAATGATCAAACTAGCCAGAATAGCTTCCATGAGGATCATGGAAGTCAATCTCAACAAGGGTTGTTTGGAAACAAGGCTTTTCATGGATTAATGCAATTTTCTGATATGCAAAGTCATACGAGTAATAGTAACAACCCTTCCTCAAATCTCTTCAATTTGGGGTTCATTTCGAACCCGACTGGTGATAGTACGACGAATATGAACAACAACAACAACACCAACAGTAATAATACGAGTAATAGCAACAACAACAGCAACAGCAACAACAACAATCTTCAATCGTCTTTGCTTAATCAATTCAATGGCACGAACAATGGCAACAATGAAGGTGGTGCATCAAACATTTTCTCAATGATGGGCGATCAAATGAATTCAGGTGCAGTCCCGTCTCTCTATAGCAACACGACGGGAGTCGGCGGTAGCGGTACGAGCGGAGCAATTGCACACATGTCAGCAACGGCGCTTCTCCAAAAGGCAGCTCAATTAGGCTCAACAACGTCAAGTAGCAACACAACAGCGACATTGCTACGATCATTTGGAAGCTCGTCAACTTCCGGTGGGAAAGCATCCGACAGGACGCTTTTCCCACCGAGCTACGGCGGAGTATTCGGTGAAAATGAGAGCAATCTTCAAGATCTAATGAATTCATTCACCACCGGAAGCTCAGCAGGCGGGCTCTTCGGTGGTGGAATGAGCTCATTCGGTACATTTGACGGCGGAAACAATAGACCAAACAACATGGAAACATTGGAAGATCCGAAACTACAACAAAATCTAAGCTCAGTTAGCATGGGAGGAACAGATAGATTAACAAGAGACTTCCTAGGTGTTGGACAAATTGTAAGAAGTATGAGTAGCGGAGGAGGAGGAGGAGGAGGCAGCGGTGGCGGTGGTTATTCGCAACGAGAACATAAACAACCGCCGCAAGGGATCGTTATGGAGGGAAATGAGAGCAATTCAGCTGCATCAAGCCAAGCATTTGGTGGTGGAGGAAATGGAAACTACCAGTGA | 1884 | 46.02 | MAASSSSVPLFGSRDEAQMRQQQQQQQQQQSNSSGVPPPKKKRNQPGTPSKYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAMGGHLYGGNSNVGLTLSQVPQMSSLQDIPNITQSDVLRLGGGGRTGQFNHLLPPSIGSSFRPPPQQAMPSSAAAAAFFLNDQTSQNSFHEDHGSQSQQGLFGNKAFHGLMQFSDMQSHTSNSNNPSSNLFNLGFISNPTGDSTTNMNNNNNTNSNNTSNSNNNSNSNNNNLQSSLLNQFNGTNNGNNEGGASNIFSMMGDQMNSGAVPSLYSNTTGVGGSGTSGAIAHMSATALLQKAAQLGSTTSSSNTTATLLRSFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGTFDGGNNRPNNMETLEDPKLQQNLSSVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGGSGGGGYSQREHKQPPQGIVMEGNESNSAASSQAFGGGGNGNYQ | 627 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8407004 | 8409497 | + | CmoCh18G006620.1 | Cmo18g00662 | 402435 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00662 | 627 | MobiDBLite | consensus disorder prediction | 327 | 408 | - | - | |
Cmo18g00662 | 627 | SMART | c2h2final6 | 147 | 167 | IPR013087 | - | |
Cmo18g00662 | 627 | SMART | c2h2final6 | 112 | 142 | IPR013087 | - | |
Cmo18g00662 | 627 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Cmo18g00662 | 627 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 167 | IPR036236 | - | |
Cmo18g00662 | 627 | Pfam | Zinc-finger double-stranded RNA-binding | 71 | 93 | IPR022755 | - | |
Cmo18g00662 | 627 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 1 | 578 | - | - | |
Cmo18g00662 | 627 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
Cmo18g00662 | 627 | MobiDBLite | consensus disorder prediction | 572 | 627 | - | - | |
Cmo18g00662 | 627 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
Cmo18g00662 | 627 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 578 | - | - | |
Cmo18g00662 | 627 | MobiDBLite | consensus disorder prediction | 603 | 627 | - | - | |
Cmo18g00662 | 627 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cmo18g00662 | 627 | Gene3D | Classic Zinc Finger | 50 | 119 | - | - | |
Cmo18g00662 | 627 | Gene3D | Classic Zinc Finger | 125 | 204 | - | - | |
Cmo18g00662 | 627 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01048 | Cmo-Chr4:5233890 | Cmo18g00662 | Cmo-Chr18:8407004 | 0 | dispersed | |
Cmo18g00662 | Cmo-Chr18:8407004 | Cmo08g00742 | Cmo-Chr8:4706485 | 6.81E-108 | dispersed | |
Cmo18g00662 | Cmo-Chr18:8407004 | Cmo14g00196 | Cmo-Chr14:889620 | 1.85E-110 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11514 | PF12171 | zf-C2H2_jaz | 3.90E-05 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00662 | K25870 | - | csv:116401647 | 808.905 |