Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00663 ATGGCCACTCCGCCGCTCCACGCCACCGCCTTATCTAACTCTTCACCTTACTCAAATCTCTACGGAATCAACCACAACCCTTCCCCTCCTCCTTTTCTGAATCAAGAACACCCAGCTTTTGATTTTGGAGAGCTTGAAGAAGCCATCGTTTTGCAAGGAGTTAAGCTCGGAAATGATGAACCCAAATCGCCACATTTTGTTTCAGGGAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACAATGGGAGAAGGTTCAAAGTCAGAGAGCACTGATTCAGGTTCAGCGAACATAAACAACGCTCTCACAAGTAAAACAGAGTTGGAAATGGAATCTGATTCGCCGATTAGCAGAAGGCTCTGTTCTTCAGCTCAAGGATTTGACCAAGTTCTTCATCATCATCATCATCATCATCATCTTCAAACAGAGCTTGAAGATGATGCCTTGAGAATAGACCCATCATCGCACCATAATCAATCCCCTGTGGAAGGAAAGATATCAAATTTTCAATCCATTTTCATGTTCTTGTTTGAATCTTTCATTGTTTTGCGAAAATGGACACTGAGACGTTTGGCTCAGAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAACTAGAGTCCAGTAGAATGAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGAGCTTGTGGCAGCGTTATGGGAGCTGCAATATTTGACATGGAGTATGCACGGTGGCTAGACGACGACCACCGTCTAATGGCAGAGCTGCGGGCGGCGCTGCATGGATATCTCCCGGACGGCGACCTTCAAGCAATAGTAGACAATTACATCTCCCACTACGACGAAATCTTTCACCTGAAAAGTGTGGCGGCGAAATCCGACGTGTTTCATTTGATTACCGGAATGTGGATGACGCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGACCATCTAAGCTGATAGAGGTGTCTGAAACATCAAATCATTTGTGGATGATAATTCCGCAATTAGAAACATTAACAGATCAACAAGCTGTGGAAATCTGTAGTTTACAAAGATCTTCACAAGAAACAGAGGATGCTCTGTATCAAGGGCTCGAACAGCTCCAACATTCTCTCATACGTGCCATCGCGGGTACTGCCGTTGTCGATGGTATCAACCATATGGCCGCTGCTGCGGGCCAACTCTCCAATCTCGAAGGCTTCATCCGTCAGGCTGATATGTTGAGACAACAAACGCTTCATCAAGTACGTCGAATTCTGACAATTCGACAAGCCGCACGATGTTTCGTCGTGATTGGAGAATACTACGAAAGACTTCGAGCTCTTAGTTCTTTGTGGGTCTCCCGACCCAGAGAGAATTGCATGAACGAGGAGAACTCGTGCCAAACAACGACCGAGCTACAAATGATTCAGAATTCGCACCACCATTTCCCGAACTTTTGA 1509 46.39 MATPPLHATALSNSSPYSNLYGINHNPSPPPFLNQEHPAFDFGELEEAIVLQGVKLGNDEPKSPHFVSGRPAATLEMFPSWPIRFQQTPTMGEGSKSESTDSGSANINNALTSKTELEMESDSPISRRLCSSAQGFDQVLHHHHHHHHLQTELEDDALRIDPSSHHNQSPVEGKISNFQSIFMFLFESFIVLRKWTLRRLAQNREAARKSRLRKKAYIQQLESSRMKLSQLEQDLHRARSQGLFLGACGSVMGAAIFDMEYARWLDDDHRLMAELRAALHGYLPDGDLQAIVDNYISHYDEIFHLKSVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEVSETSNHLWMIIPQLETLTDQQAVEICSLQRSSQETEDALYQGLEQLQHSLIRAIAGTAVVDGINHMAAAAGQLSNLEGFIRQADMLRQQTLHQVRRILTIRQAARCFVVIGEYYERLRALSSLWVSRPRENCMNEENSCQTTTELQMIQNSHHHFPNF 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8459117 8465043 - CmoCh18G006630.1 Cmo18g00663 402436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00663 502 CDD bZIP_HBP1b-like 196 246 - -
Cmo18g00663 502 MobiDBLite consensus disorder prediction 87 107 - -
Cmo18g00663 502 PANTHER TRANSCRIPTION FACTOR TGA9 63 481 - -
Cmo18g00663 502 Pfam bZIP transcription factor 198 236 IPR004827 GO:0003700|GO:0006355
Cmo18g00663 502 Gene3D - 196 243 - -
Cmo18g00663 502 ProSiteProfiles DOG1 domain profile. 254 471 IPR025422 GO:0006351|GO:0043565
Cmo18g00663 502 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 237 IPR004827 GO:0003700|GO:0006355
Cmo18g00663 502 Coils Coil 214 241 - -
Cmo18g00663 502 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
Cmo18g00663 502 Pfam Seed dormancy control 272 344 IPR025422 GO:0006351|GO:0043565
Cmo18g00663 502 SMART brlzneu 192 254 IPR004827 GO:0003700|GO:0006355
Cmo18g00663 502 PANTHER TRANSCRIPTION FACTOR TGA9 63 481 - -
Cmo18g00663 502 SUPERFAMILY Leucine zipper domain 197 237 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00330 Cmo-Chr13:4188990 Cmo18g00663 Cmo-Chr18:8459117 2.81E-178 dispersed
Cmo18g00663 Cmo-Chr18:8459117 Cmo20g00186 Cmo-Chr20:917989 9.69E-138 dispersed
Cmo18g00663 Cmo-Chr18:8459117 Cmo06g00021 Cmo-Chr6:139954 2.71E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11515 PF14144 DOG1 1.70E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00663 K14431 - csv:101204604 741.88