Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00674 ATGTCAACAAAGGTCATTGCCTTAGGCCTCATACTGTTCTTCAGCTTCGCATCGCTTAGCTTTGGAGCTCTTCAAGTGGGGTTTTACAAAGGAAAATGTGGGTTTAGAGATGTTGAATCCATTGTTGCCGGTGTTGTTGCCGACGCCGTTGAAAATGATGGCACTCTTGTAGCTGCTCTTCTTCGCTTGCAGTTCCATGATTGCTTTGTGTCTGGATGCGACGCTTCCCTACTCCTCGATGGGAGCGATAGCGAGAAGCTCGCTCCGCCGAATTTGAGCGTTAGAGGGTATGATTTGATTGATGAAGTTAAGATTGCTGTGGAGAGTGTTTGTCCTGGCGTTGTCTCGTGTGCTGATATTATAGCTATGGCTACCAGAGATGCTGTTCATTTGGCTGGAGGAGCACGATACCGTGTCGAAACTGGACGGAGAGACGGGTTCAAACCGGCGAAAAATGTGGATCTTCCGGGGCCTTCGATTTCAGTTCCAGACTCCATTGAAGCCTTCTCTGATAGGAACCTTACTGCTACAGATATGGTTTATCTTCTTGGCGGCCATACCGTTGGTGTATCACAATGCTTATTCTTCAAGGATCGCCTCTATAACTACAAGAAGACAGGGAGACCTGACCCGACCATCGACTCGTGGTTTCTCGGCAACCTAAGAGACCAATGTCCTGAAGATTCTAACGACAACAACGTCGTATTTCTCGACCAAACCAGTATGAGTTCTTTCGTCGTTGACAAGTCATTTCACAAGCAAATATGGCAACGAAGAGGCATACTGGAAATCGATCAACAACTTGCTTTGCATCCGTTAACGAAGGATTTGGTGACGAGGGTGGCGTTCGGATTCGACTTCGCTTCCAAATTTGGAGATGCCATGATCAAGATGGGAAGATTTGGAGTTCTCACTGGGTCTGATGGGGAGATTAGAAGAACATGTGAGGCTGTTAATTCAGCATGGTGA 969 47.06 MSTKVIALGLILFFSFASLSFGALQVGFYKGKCGFRDVESIVAGVVADAVENDGTLVAALLRLQFHDCFVSGCDASLLLDGSDSEKLAPPNLSVRGYDLIDEVKIAVESVCPGVVSCADIIAMATRDAVHLAGGARYRVETGRRDGFKPAKNVDLPGPSISVPDSIEAFSDRNLTATDMVYLLGGHTVGVSQCLFFKDRLYNYKKTGRPDPTIDSWFLGNLRDQCPEDSNDNNVVFLDQTSMSSFVVDKSFHKQIWQRRGILEIDQQLALHPLTKDLVTRVAFGFDFASKFGDAMIKMGRFGVLTGSDGEIRRTCEAVNSAW 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8586581 8588580 - CmoCh18G006740.1 Cmo18g00674 402447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00674 322 CDD secretory_peroxidase 24 318 IPR033905 GO:0004601|GO:0042744
Cmo18g00674 322 ProSiteProfiles Plant heme peroxidase family profile. 23 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Cmo18g00674 322 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 Pfam Peroxidase 44 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 Gene3D Peroxidase, domain 2 156 298 - -
Cmo18g00674 322 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 Gene3D - 28 319 - -
Cmo18g00674 322 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PANTHER PEROXIDASE 25-RELATED 14 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00674 322 PANTHER PEROXIDASE 14 317 - -
Cmo18g00674 322 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00194 Cmo-Chr8:1131803 Cmo18g00674 Cmo-Chr18:8586581 4.89E-71 dispersed
Cmo18g00674 Cmo-Chr18:8586581 Cmo19g00285 Cmo-Chr19:2076516 4.26E-79 dispersed
Cmo18g00674 Cmo-Chr18:8586581 Cmo11g01911 Cmo-Chr11:13273050 5.36E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00674 K00430 - csv:101210173 457.218