Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00682 ATGAGAACTCGAACAGGCCTCTGTTACCCTCGACTTGAAACCACCCTCTGCTCCGACACCCGTCATCGCAAAAGAACTCACGATGTCGCCGCCGACCGCCGCCCCCATTTTTGTCGGAAACGAACCAAGCTCTCTCCACAAATCACTCCGCCACCGCCTTCCGATTTGTTTGATTCCTTGCCTGACGACCTCGTCATTTCGATTCTCTCTAAACTCAGCTCCGCCGCCTCTTCCCCCTCCGATTTCATCAACATCTTGCTAACATGCAAAAGATTAAATAATTTAGGACTTATTCCCATAGTTTTATCCAAAGCTTCCCAGAAGACGTTTGCAATTAAGGCACGGAATTGGTCTGAATCCGCTCATCGGTTTCTCAAGCGGTGTTCCGACGCCGAAAATATTGATGCCAGTTATACCCTCGGCATGATTCGTTTCTACTGTTTGCAAAACAGAGGAAGTGGAGCTTCGCTGATGGCTAAAGCGGCGATTTGTTCCCACGCGCCGGCGCTTTACTCACTCGCTGTCATTCAGTTCAACGGCAGCGGCGGTTCCAAAAGCGATAAGGATCTCCGTGCCGGAGTTGCTTTATGCGCACGTGCTGCTTTTCTCGGTCACATCGACGCGCTGAGAGAACTCGGGCATTGTCTTCAAGACGGTTACGGCGTTCGTCAGAATATAACAGAGGGTCGTCGGTTTCTTGTCCAGGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCGTCGGAGGCGGGTTCTTCGGTTATTGCATCACGGTGTTGTGTTACGTGGAACCCTCACGTTCCACACCGGCACGTAACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGAAGCGCATCCGGTGAGTCGGTTTATGGCGGAGTGGTTTGGGGCACGTGGGGAGTCGCCGGGGATTGGGCTGAGGATGTGTTCGCACGTGGGATGTGGACGGCCGGAAACGAGACAGCATGAGTTCCGTCGATGTTCTGTTTGTGGCTCTGTAAATTACTGCTCACGTGCGTGTCAGGCGCTGGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTTGAACGTTGGGTTGATGATAACGGCGACGGTGGGGCCGATGATATCATGGCCGAAAGTTGA 1149 53.61 MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRPHFCRKRTKLSPQITPPPPSDLFDSLPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPIVLSKASQKTFAIKARNWSESAHRFLKRCSDAENIDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAEWFGARGESPGIGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVERWVDDNGDGGADDIMAES 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8741653 8743658 + CmoCh18G006820.1 Cmo18g00682 402455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00682 382 Gene3D Tetratricopeptide repeat domain 100 253 IPR011990 GO:0005515
Cmo18g00682 382 Gene3D - 311 365 - -
Cmo18g00682 382 PANTHER OSJNBA0044M19.1 PROTEIN 1 374 - -
Cmo18g00682 382 SUPERFAMILY F-box domain 48 107 IPR036047 GO:0005515
Cmo18g00682 382 SUPERFAMILY HIT/MYND zinc finger-like 314 365 - -
Cmo18g00682 382 ProSiteProfiles Zinc finger MYND-type profile. 318 360 IPR002893 -
Cmo18g00682 382 Pfam MYND finger 321 360 IPR002893 -
Cmo18g00682 382 PANTHER MYND DOMAIN-CONTAINING 1 374 IPR044508 -
Cmo18g00682 382 SUPERFAMILY HCP-like 118 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00682 - - - csv:101213808 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00056 Cmo-Chr10:264332 Cmo18g00682 Cmo-Chr18:8741653 7.68E-146 dispersed
Cmo13g00836 Cmo-Chr13:7760168 Cmo18g00682 Cmo-Chr18:8741653 5.74E-142 dispersed
Cmo18g00218 Cmo-Chr18:1430561 Cmo18g00682 Cmo-Chr18:8741653 1.44E-138 dispersed
Cmo18g00682 Cmo-Chr18:8741653 Cmo04g01378 Cmo-Chr4:7027274 6.86E-09 dispersed
Cmo12g00063 Cmo-Chr12:333592 Cmo18g00682 Cmo-Chr18:8741653 1.74E-174 wgd
Cmo18g00682 Cmo-Chr18:8741653 Cmo04g01931 Cmo-Chr4:9862839 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00682 Cmo_Chr18 FPKM 14.974146 13.544435 0.0 0.402771 3.80735 4.985996 3.54791 0.0 0.0 0.0