Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00688 ATGAAAAAGGCCGGAGTTGATCATAAGATCAATTTTGTAGAAGCACAGGCGTCGGTCTTTCTCCACGACCTCGTCAATGATGGAAAAGAAGGAGAATTTGATTTTGCATTTGTGGATGCTAACAAAGAATGGTACATTAAATATCACAAATTTCTCTTGAAACTGGTGAAGTTTGGATCAGTGGCACAGAGCGAAGACAACATTGATGAAAATTTAAAGGTTAATAGAAGTCATCTACGAGAACTCAATGCTTTTCTTATTAATGACTCGTGCATTAAGATAGCTCTCCTCTCTATTGGAGATTGTCTCACTCTCCGCAGGCGTATTCAGTAA 333 38.44 MKKAGVDHKINFVEAQASVFLHDLVNDGKEGEFDFAFVDANKEWYIKYHKFLLKLVKFGSVAQSEDNIDENLKVNRSHLRELNAFLINDSCIKIALLSIGDCLTLRRRIQ 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8774301 8774829 - CmoCh18G006880.1 Cmo18g00688 402461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00688 110 PANTHER TAPETUM-SPECIFIC METHYLTRANSFERASE 1 1 109 - -
Cmo18g00688 110 Pfam O-methyltransferase 1 109 IPR002935 GO:0008171
Cmo18g00688 110 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 109 IPR002935 GO:0008171
Cmo18g00688 110 PANTHER O-METHYLTRANSFERASE-RELATED 1 109 - -
Cmo18g00688 110 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 108 IPR029063 -
Cmo18g00688 110 Gene3D Vaccinia Virus protein VP39 1 110 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00688 K00588 E2.1.1.104; caffeoyl-CoA O-methyltransferase [EC:2.1.1.104] K13272 csv:101212121 127.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00688 Cmo-Chr18:8774301 Cmo18g00692 Cmo-Chr18:8802403 1.34E-49 dispersed
Cmo18g00687 Cmo-Chr18:8768982 Cmo18g00688 Cmo-Chr18:8774301 3.24E-45 tandem
Cmo18g00688 Cmo-Chr18:8774301 Cmo18g00689 Cmo-Chr18:8781950 6.49E-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1237 . . . . . . . . . Cmo18g00688 . Cma18g00701 . . . . . Bhi07g01919 Tan04g0055 . Lac13g0058 Hepe10g1522 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01344 Cam11g1402 Cec11g1426 Cco11g1421 Clacu11g1559 Cmu11g1380 Cre11g1800 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001717 0 4 0 0 0 1 0 1 1 1 1 4 4 1 1 5 4 3 1 4 1 0 1 2 3 2 1 4 6 6 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00688 Cmo_Chr18 FPKM 1.657143 1.539223 2.472583 2.20521 1.068577 1.225068 1.143536 16.627258 16.664167 16.917959