Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00698 ATGGATGTTCCCGACGTTGAAGAAATACTTTTTTCTCCCACTGATGCAAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGCAATTTATTGCCAGGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCAAGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGGCACTGCTCGGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGTCAAGATGTTCTCTTGAAGTTAGTCTTGTATGCGTTGAAGATATTGTTTCAGAATCAATTGGATTTCAGATTCAGCAGATAGTGGACGAACTAAAGAACATTGTTTTTTTACTTGACCCACTCGAGAAACAAGTTGGTGATGATATCATTGCATTACTCCTGCAAGAAAGAAAATTTGATGATTCCAATGGTCATAATGAGCTGGAGCATTTTCATCAGGCCGCCACGAAACTGGGAATTACATCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAACCGAGTTGTCAGATGACACTGACTCACAGGGAGGATCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACCTACAGCCAACGGCCGAATGTTTGAACATCAGCTCTCAAAGCTCAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAAATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCCGGGCAAACATATGAAAGGATCTGCATTGAGAAATGGTTCAGTGATGGTCACAAAATCTGCCCGAAGACTCAATATTGGCTCTCCCATCTGTCCTTGACACCTAATTACTCTGTCAAAGGTCTTACTGCTAATTGGTGTGAATCTAACGGAGTTCCTATCCCTGACAGTCCGCCAAAGTCGCTTGATCTGAATTATTGGAGGCTTGCACTGTCTGATTCCGAGTCTGGACAATCAAGATCTGTGGACAAAGTTGGCTCTTGCATGTTGAAGGAAGTTAAGATAGTTCCTTTGGAGGAAAGTGGAACAATAAAGGTTGTTGAAGAAAATGAAGCAGAGGATAATACATACATGGAGGAATCATCTGATTTTATTACTCTGGAGAGTTGTGTAAATTTTATGACAGTATTGACCGAAGAGGGCGACTTGAGTAAAAAATGCAAGGTTGTGGAGCAGATAAGACTTTTACTCAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTCCTGAAGCACTCATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCCGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCAGCAGGTGTAATCTCATTGTTGGAGAATATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCCTTATATTTGAATCTTTCCTGCCTAGAAGATGCGAAACCTATCATTGGCTCTAGTAGAGCTGTTCCTTTCCTTATCCAGCTGCTTACTTCTAATGGTGAATCCCAAACGAAGCTCGATGCACTTCACACCCTTTACAACCTCTCGACCACGCCCTCCATTGTCCCCGTTCTTCTTTCCTCCGCCATCATTGATGGACTTCAATCCTTTTTTGCAACTCCCAGTGACAACTTATCGACTCAGACTTCCTTAGCTATCTTAATAAACTTAGCTTCAAGCCAGTTGGGGATAGAAGAAATAACCTCAGCCCCAGAGCTTATCAGCGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGCTTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTGTTACAGGAAGGAGTGATTCCTGGATTAGTGGCGATTACGGTAAACGGGACGTCGAGAGGGAAGATAAAAGCTCAGAAGCTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAGGATACCGATCTCGGTCAGCAGCGAGAGCGAGATGGAAATAGCAACGCAACCATGGCTGTTCCAGAGCCAAAAACTCTATGCAAATCAGTATCAAAGAAAAAGATGGGGAAAGCATTAAGCTTTTTTGGGAAGAACAAACGGTTTTCACTATACCAATGTTGA 2310 42.77 MDVPDVEEILFSPTDAKLHGEMYKKLAAIYCQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKSRCSLEVSLVCVEDIVSESIGFQIQQIVDELKNIVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRTELSDDTDSQGGSTPCSPTVRCSLEDNGPTANGRMFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKICPKTQYWLSHLSLTPNYSVKGLTANWCESNGVPIPDSPPKSLDLNYWRLALSDSESGQSRSVDKVGSCMLKEVKIVPLEESGTIKVVEENEAEDNTYMEESSDFITLESCVNFMTVLTEEGDLSKKCKVVEQIRLLLKDDDEARILMGANGFPEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIIGSSRAVPFLIQLLTSNGESQTKLDALHTLYNLSTTPSIVPVLLSSAIIDGLQSFFATPSDNLSTQTSLAILINLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLLLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKIKAQKLLMLFREQRQKDTDLGQQRERDGNSNATMAVPEPKTLCKSVSKKKMGKALSFFGKNKRFSLYQC 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8845107 8850981 + CmoCh18G006980.1 Cmo18g00698 402471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00698 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 721 - -
Cmo18g00698 769 SUPERFAMILY ARM repeat 433 697 IPR016024 -
Cmo18g00698 769 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cmo18g00698 769 SMART arm_5 545 586 IPR000225 GO:0005515
Cmo18g00698 769 SMART arm_5 506 544 IPR000225 GO:0005515
Cmo18g00698 769 SMART arm_5 460 504 IPR000225 GO:0005515
Cmo18g00698 769 CDD RING-Ubox_PUB 284 325 IPR045210 -
Cmo18g00698 769 SUPERFAMILY RING/U-box 274 356 - -
Cmo18g00698 769 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cmo18g00698 769 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cmo18g00698 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cmo18g00698 769 Gene3D - 406 720 IPR011989 -
Cmo18g00698 769 PANTHER U BOX DOMAIN-CONTAINING 1 721 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01920 Cmo18g00698 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00674 Cmo-Chr16:3336796 Cmo18g00698 Cmo-Chr18:8845107 4.70E-72 dispersed
Cmo18g00386 Cmo-Chr18:2497986 Cmo18g00698 Cmo-Chr18:8845107 1.91E-12 dispersed
Cmo18g00698 Cmo-Chr18:8845107 Cmo01g00619 Cmo-Chr1:3195460 6.91E-52 dispersed
Cmo12g00050 Cmo-Chr12:263478 Cmo18g00698 Cmo-Chr18:8845107 0 wgd
Cmo18g00698 Cmo-Chr18:8845107 Cmo04g01920 Cmo-Chr4:9795617 0 wgd
Cmo18g00698 Cmo-Chr18:8845107 Cmo05g00089 Cmo-Chr5:359746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00698 - - csv:101210079 1341.25