Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00699 ATGGAGGGAAATCGATCTCTTTTATCTTCTGCAGGCATAGCTGGTGATGGAAGATGTTTGTTTCGATCAGTGGTTCACGGTGCTTGTCTCAGATCGGGCAAGCCAGCTCCAAACGAGGATCTTGAAAAAGAGCTTGCAGACGAGCTTAGAGAGAACGTTGCAAATGAGTTGATGAAGAGGCGATTGGACACCGAGCGGTTTATTGAAGGTGACTTTGGCCAGTATGTTAGATGCATGCGCCAACCACACGTTTGGGGAGGAGAACCTGAGTTACTTATGTCTTCACACGTCCTACGGGTGCCAATCTCGGTCTACATTTGGGACATGAAGTCAGCAAATCTGAAGCTCATAGCTGAGTATGGGCAGGAGTACAGTAAAGAGAATCCTATTCGCGTCCTTTTTCACAGCTATGGACATTATGATTTACTGAAGGCTCCATGA 441 46.71 MEGNRSLLSSAGIAGDGRCLFRSVVHGACLRSGKPAPNEDLEKELADELRENVANELMKRRLDTERFIEGDFGQYVRCMRQPHVWGGEPELLMSSHVLRVPISVYIWDMKSANLKLIAEYGQEYSKENPIRVLFHSYGHYDLLKAP 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8852746 8856605 + CmoCh18G006990.1 Cmo18g00699 402472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00699 146 Gene3D - 3 146 - -
Cmo18g00699 146 PANTHER OTU DOMAIN CONTAINING PROTEIN 11 146 - -
Cmo18g00699 146 SUPERFAMILY Cysteine proteinases 12 144 IPR038765 -
Cmo18g00699 146 Coils Coil 38 58 - -
Cmo18g00699 146 ProSiteProfiles OTU domain profile. 8 146 IPR003323 -
Cmo18g00699 146 PANTHER OS09G0487700 PROTEIN 11 146 - -
Cmo18g00699 146 Pfam OTU-like cysteine protease 15 140 IPR003323 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00699 K18342 OTUD6; OTU domain-containing protein 6 [EC:3.4.19.12] - csv:101209836 243.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00442 Cmo-Chr14:2104759 Cmo18g00699 Cmo-Chr18:8852746 6.12E-12 dispersed
Cmo18g00699 Cmo-Chr18:8852746 Cmo18g00932 Cmo-Chr18:10481499 2.01E-56 dispersed
Cmo18g00699 Cmo-Chr18:8852746 Cmo06g00077 Cmo-Chr6:468145 3.80E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1176 . . . . . . . . . Cmo18g00699 . Cma18g00711 . Car18g00656 . Cpe09g00578 . Bhi07g01897 . . . Hepe10g1531 . . . . . . . . . . . Cone8ag0739 . Lsi04g00664 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01356 . Cec11g1440 . Clacu11g1571 Cmu11g1391 Cre11g1812 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000657 2 7 1 4 3 2 4 2 3 3 3 3 3 3 3 4 3 4 4 3 3 3 2 2 2 3 2 8 5 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00699 Cmo_Chr18 FPKM 32.986702 37.080475 1.341502 1.097719 5.788358 5.878321 6.307679 4.780735 4.93535 5.311933