Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00700 ATGAAATTGAGTCCGAGAGAAGTGGAAAAGCTAGGTCTACATAATGCGGGATTTCTAGCGCAGAAGCGTCTTGCTCGTGGCGTGAGATTGAATTACGCTGAAGCTGTAGCACTAATTGCCGCACAGATTTTGGAGTTTGTTCGTAATGGCGAGAAGAGCGTGGCGGATCTTATGGATTTGGGGAAAACATTGTTAGGAAGGAGATTAGTTCTTCCTGGTGTTCCGCATCTTTTGGATTACGTTCAGGTTGAAGGAACTTTTCCCGATGGGACAAAGTTAATCACTGTTCATAATCCCATTGATTCAGAGGATGGGAATCTGGAGCTAGCGTTGCAGGGCTCTTTTCTTCCAGTTCCTTCGTTAGACAAGTTCCCTTCGTTGGAAAGTAGCACAGTGCCTGGCGAGATTATCTGTGTTGATGGTGATATTGCAATCAATGTTGGGCGTAAAGCTGTAATACTCAAGATAAACAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCATTATCACTTTATTGAGACAAATCCTTCCTTGGTTTTCGATCGATCTAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCGGCAACACGATTTGAGCCAGGGGAGCAAAAATCTGCCACCCTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAATGGCATTGCTGATGGTCCAGTGGATGATTCCAAGTTGAAAGAAGTGATGGAAGCTGTGCATTCAAGAGGATTTGGAGATTTGGAAGAAAAAGATGCGAGAGTAGGTGTCACTGGAGATAAGGACGATGTATTCACGACGAGAGTTTCTCATGAGGATTATGCGAACCGGTATGGTCCTACTACCGGTGACAAAGTTCGACTTGGTGACACAGATTTATACGCTGAAATCGAACACGATTTCTCCCTTTATGGAGATGAATGTGTATTTGGAGGTGGAAAGGTTATTAGAGACGGAATGGGCCAATCATGTGGGCATCCACCGGCTTCATCTCTTGATACTGTAATAACCAATGCAGTGATCATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCCATTGGAAAATCTGGCAATCCTGATGTTATGGATGGAGTTCGTCCTAATATGATTATTGGGCTTAATACTGAGGTTATAGCTGGAGAAGGCTTGCTGGTTACTGCAGGAGCTATAGATTGTCATGTGCACTACATATGCCCTCAAATGGTACATGAAGCGATATCGAGCGGCATCACGACACTGGTCGGAGGTGGAACCGGGCCTGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGTGCAGATGAAGATGATGCTGCAATCCACTGATGAACTTCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACAGTTCAATGCCAGATGAGATACATGAAATTATAAGGGCGGGCGCGATGGGAGTGAAGCTACATGAAGATTGGGGATGTACTCCTGCTGCTATTGACAATTGTTTAGCTGTGGCAGAAGAATATGACATTCAGGTAAACATTCATACTGACACCTTGAATGAATCTGGATTTGTGGAAGATACCATTGCAGCTTTTAAAGGAAGAACTATACACACGTACCATAGTGAAGGAGCTGGAGGTGGTCATGCTCCCGATATCATTCGAGTGTGTAGTGTGAAAAATGTACTACCGTCGTCGACTAATCCAACACGACCCTTCACGAGCAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGATCGCAACATTAAAGAAGATTTGGCTTTTGCTGAATCAAGGATAAGAGAGGAAACAATTGCTGCAGAGGATATTTTGCATGATATGGGAGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGGTTTGTAGAACATGGCAAACTGCGCACAAAATGAAGCTGCAAAGAGGACCACTTGATTCCAGTAAACCGGACAACGACAACCTTCGAATCAAGCGATACGTCTCGAAATATACAATCAATCCAGCTATAGCGAACGGGTTTTCTCAGTATATTGGTTCAGTAGAGGTAGGTAAGTTGGCTGATCTTGTCCTGTGGAAGCCATCCTTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGGTGGTACAATTGCGTGGGCGAACATGGGCGATCCAAATGCGAGCATTCCTACACCCGAACCGATACTAATGAGGCCAATGTATGGATCAATTGGGAAGGCAGGAAGTGGGAACTCAATTGCCTTTGTCAGCAAGGCGAGTCTTCACGCGGGAGTTAAGGCCATGTATGGTCTAAACAAGAGAGTTGAAGCTGTGGGGAGCACAAGGAAGTTGACAAAACTTGATATGCAATGGAATGATGCCCTTCCAAACATAACTGTGGATCCCGAAAACTACGACGTAATAGTAGATGGCGATGTTCTTACCTGCCCGCCCGTCTCGACCGTTCCGCTTTCGACCAACTACTTCCTTTTCTAG 2517 44.66 MKLSPREVEKLGLHNAGFLAQKRLARGVRLNYAEAVALIAAQILEFVRNGEKSVADLMDLGKTLLGRRLVLPGVPHLLDYVQVEGTFPDGTKLITVHNPIDSEDGNLELALQGSFLPVPSLDKFPSLESSTVPGEIICVDGDIAINVGRKAVILKINNKGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGEQKSATLVAIGGNQVIRGGNGIADGPVDDSKLKEVMEAVHSRGFGDLEEKDARVGVTGDKDDVFTTRVSHEDYANRYGPTTGDKVRLGDTDLYAEIEHDFSLYGDECVFGGGKVIRDGMGQSCGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISIGKSGNPDVMDGVRPNMIIGLNTEVIAGEGLLVTAGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPVQMKMMLQSTDELPLNFGFTGKGNSSMPDEIHEIIRAGAMGVKLHEDWGCTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEDTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCSVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDRNIKEDLAFAESRIREETIAAEDILHDMGAISIISSDSQAMGRIGEVVCRTWQTAHKMKLQRGPLDSSKPDNDNLRIKRYVSKYTINPAIANGFSQYIGSVEVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPEPILMRPMYGSIGKAGSGNSIAFVSKASLHAGVKAMYGLNKRVEAVGSTRKLTKLDMQWNDALPNITVDPENYDVIVDGDVLTCPPVSTVPLSTNYFLF 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8857779 8867261 + CmoCh18G007000.1 Cmo18g00700 402473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00700 838 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550|GO:0043419
Cmo18g00700 838 CDD Urease_beta 132 231 IPR002019 GO:0035550|GO:0043419
Cmo18g00700 838 TIGRFAM urease_gam: urease, gamma subunit 1 102 IPR002026 GO:0016151|GO:0043419
Cmo18g00700 838 Hamap Urease subunit beta [ureB]. 131 231 IPR002019 GO:0035550|GO:0043419
Cmo18g00700 838 Gene3D - 400 819 - -
Cmo18g00700 838 Pfam Urease alpha-subunit, N-terminal domain 271 390 IPR011612 -
Cmo18g00700 838 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Cmo18g00700 838 Hamap Urease subunit alpha [ureC]. 270 838 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 SUPERFAMILY Metallo-dependent hydrolases 400 838 IPR032466 -
Cmo18g00700 838 Pfam Urease subunit beta-alpha linker domain 231 262 IPR040881 -
Cmo18g00700 838 TIGRFAM urease_beta: urease, beta subunit 132 232 IPR002019 GO:0035550|GO:0043419
Cmo18g00700 838 Gene3D Urease, subunit C, domain 1 270 751 IPR011059 GO:0016810
Cmo18g00700 838 PRINTS Urea amidohydrolase (urease) protein signature 566 583 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 PRINTS Urea amidohydrolase (urease) protein signature 605 621 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 PRINTS Urea amidohydrolase (urease) protein signature 672 687 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 PRINTS Urea amidohydrolase (urease) protein signature 698 711 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 TIGRFAM urease_alph: urease, alpha subunit 272 838 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Cmo18g00700 838 CDD Urease_alpha 271 837 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 Pfam Amidohydrolase family 396 723 IPR006680 GO:0016787
Cmo18g00700 838 SUPERFAMILY Composite domain of metallo-dependent hydrolases 271 448 IPR011059 GO:0016810
Cmo18g00700 838 ProSitePatterns Urease nickel ligands signature. 398 411 IPR029754 GO:0016151
Cmo18g00700 838 SUPERFAMILY Urease, beta-subunit 132 259 IPR036461 -
Cmo18g00700 838 SUPERFAMILY Urease, gamma-subunit 1 105 IPR036463 GO:0016151|GO:0043419
Cmo18g00700 838 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Cmo18g00700 838 Gene3D Urease, beta subunit 149 269 IPR036461 -
Cmo18g00700 838 ProSitePatterns Urease active site. 588 604 IPR017950 GO:0009039
Cmo18g00700 838 ProSiteProfiles Urease domain profile. 400 838 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 PIRSF Urease 1 838 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cmo18g00700 838 PANTHER UREASE 1 838 - -
Cmo18g00700 838 SUPERFAMILY Composite domain of metallo-dependent hydrolases 680 750 IPR011059 GO:0016810
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00700 K01427 URE; urease [EC:3.5.1.5] - csv:101209590 1424.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01918 Cmo18g00700 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00700 Cmo-Chr18:8857779 Cmo04g01918 Cmo-Chr4:9781512 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00700 Cmo_Chr18 FPKM 3.788356 4.250649 3.115809 3.290684 3.431797 2.644311 3.198745 1.153052 1.430613 1.366105