Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00702 ATGGCAGCGGGGAGGATGGGGGGTTATCGCGACTATGATATGAAGGACCGAGATTCCGGTTTTGATGTGAGTGCGAAGGAAGAGTATGAACGGGGACGGGGACGGGGACGTAACCGTGAAAGCAATAAGAGTCGAGGTTGGGAGGTTAGGGATAGAATTAGGGTCAGGCCAAAGGAGATCAGGGAGAGGGAATTAGGTAATGGTAGTGTACGTTCTTCAAGTAGAAGCGATTCTGGCAGCAGCGGTGGGCCTCATGGAATCAATCAAAGTGTTTTTCTTGTCAGGGCAATGGATAGGGAGCCGGGTGAGTTATCCAGTGAGAGTGGATCTGACGATGCCACCGATTCTGGATTACAATTTAAGAATAGCGAGGCAGCAAAGGTGGCGGAGAATGGAATTCGTTCTCCACCTGAGAAGAAGAGGAAGTTCTCACCGATAGTTTGGGACAGAGACGTCAAGGAAGAGACTGTTTCCCTAAGAAATAAGGTCGCCAAGGCTGTGACAGATTCATCTCTGCCGATTCCTAAGGAGCAGCGGCTATCTCCTAATGTGGTATTGGATACTCTTGATGCCGTACCCACTGTCAGAACTATTGATCACGAGTATGTGCAACCTTCTTCACTTGCTGAATCTTCTGTTGCTCTTGGATCAGATGAATTTTCCGCTAGTGGTTCACCAATGATGCCATATTCTGCTTCAATTAGGAAACCATTGGAGAGTGATCTTGAAGCAGAAAATCTTGGGGATGATGATTATGTCCCCACAAGAAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACTCTCCCGGTGATGAAGGTGAAATTTTAGACAAGGAAATCCCTAAAAGGAGGAAGACAACACCAATTTCCGAGTCCTTGGAGGGCATTCGACTTCAAAGGAAATCATTAACTCCAGAGATTGGGGAGGTAATGAGACATGGCTCTGAAGCAGGGACAAGATCATCTGAATCGACAGAACATGGTGATCGGTCTCGATCATCTAGTGGGAATCATTACCTCGGTAATGATTTTGAGAAGTTTGAAGGCACAGAGCGAGGTGATGAAATTCATAGATCAGATACTAGCAGTAGCCGGTTAGATAATGATTCTGAGGATGAGACAGAATCTCCCGAGGAGGCAGAGCTCAGCGGCCCTCCCCCCCGAAATGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAAAGATTGAATAAGATTGATGAAGGAACTTACGGTGTTGTATATAGAGCCAGAGACAAAAAGTCAGGGGAAATAGTGGCGTTGAAGAAAGTAAAAATGGAAAAGGAGCGAGAAGGTTTTCCAATGACTTCTTTGAGAGAAATAAACATTCTCCTTTCGTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGCCTTGATAGCATTTTTATGGTAATGGAATACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTACAGTTATTGGAGGGTGTTAAATATCTTCATGATAATTGGGTGCTTCATAGGGACTTAAAAACATCAAATTTACTCTTGAATAATCAGGGAGAGTTGAAGATCTGTGATTTTGGATTAGCTCGACAGTATGGGAGCCCTTTGAAAACATATACGCATATGGTTGTTACTCTTTGGTACAGGGCACCTGAGCTTCTTTTGGGAACAAGACAGTATTCGACAGCCATTGATATGTGGTCATTGGGTTGTATTATGGCTGAATTATTATCAAAGCAACCACTGTTTAATGGGAAAACAGAAGTTGATCAACTTGACAAGATATTCCGAATGCTAGGCACACCAAATGAAACAATTTGGCCTGGATTTTCCAATCTTCCAGGAGTTCGGGTCAACTTTGTTAAGCACCAGTACAACTTACTGCGTAAGAAATTTCCTGCAACATCATTCACGGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTATTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCACGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGCATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTCCGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAGCGCAGAAAGGAGTTGCAGCAAGGAGAATTGGGAACATCTGGCTTGTTTGGCTGA 2250 43.91 MAAGRMGGYRDYDMKDRDSGFDVSAKEEYERGRGRGRNRESNKSRGWEVRDRIRVRPKEIRERELGNGSVRSSSRSDSGSSGGPHGINQSVFLVRAMDREPGELSSESGSDDATDSGLQFKNSEAAKVAENGIRSPPEKKRKFSPIVWDRDVKEETVSLRNKVAKAVTDSSLPIPKEQRLSPNVVLDTLDAVPTVRTIDHEYVQPSSLAESSVALGSDEFSASGSPMMPYSASIRKPLESDLEAENLGDDDYVPTRNISSSRWAAGNNSPGDEGEILDKEIPKRRKTTPISESLEGIRLQRKSLTPEIGEVMRHGSEAGTRSSESTEHGDRSRSSSGNHYLGNDFEKFEGTERGDEIHRSDTSSSRLDNDSEDETESPEEAELSGPPPRNVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRMLGTPNETIWPGFSNLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKAFMPTFPAQHAQDRRFRRVMKSPDPLEEQRRKELQQGELGTSGLFG 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8870450 8873310 - CmoCh18G007020.1 Cmo18g00702 402475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00702 749 Pfam Protein kinase domain 403 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00702 749 SMART serkin_6 403 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00702 749 MobiDBLite consensus disorder prediction 69 87 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 320 334 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 253 267 - -
Cmo18g00702 749 PANTHER CELL DIVISION PROTEIN KINASE 233 749 - -
Cmo18g00702 749 CDD STKc_CDC2L1 397 694 IPR045267 GO:0004674|GO:0005524|GO:0006468
Cmo18g00702 749 MobiDBLite consensus disorder prediction 107 121 - -
Cmo18g00702 749 Gene3D Transferase(Phosphotransferase) domain 1 486 724 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 345 371 - -
Cmo18g00702 749 ProSiteProfiles Protein kinase domain profile. 403 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00702 749 Gene3D Phosphorylase Kinase; domain 1 389 485 - -
Cmo18g00702 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Cmo18g00702 749 MobiDBLite consensus disorder prediction 241 392 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 725 749 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 9 68 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 273 291 - -
Cmo18g00702 749 MobiDBLite consensus disorder prediction 1 142 - -
Cmo18g00702 749 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 233 749 - -
Cmo18g00702 749 SUPERFAMILY Protein kinase-like (PK-like) 395 700 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00702 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - csv:101209096 1253.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01331 Cmo-Chr7:7505805 Cmo18g00702 Cmo-Chr18:8870450 7.47E-79 dispersed
Cmo18g00702 Cmo-Chr18:8870450 Cmo20g00018 Cmo-Chr20:154242 6.74E-92 dispersed
Cmo18g00702 Cmo-Chr18:8870450 Cmo04g01916 Cmo-Chr4:9768765 0 wgd
Cmo18g00702 Cmo-Chr18:8870450 Cmo05g00082 Cmo-Chr5:327174 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75066 PF00069 Pkinase 4.70E-76 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00702 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0