Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00710 ATGGCCTTGAATTTTTCATATCGACCCATCTTTCCCGCACATCTTTCGGAGGAAAATTCGGTTTCTCCGATGAGCATTTCAGGTGGTTTTGTCGTTGATGGTGCTCCCGAGAGAAATTCTGACGTTTATGGGATGTCCTGGCTGATTAATCGGGAGCTAGAGAATTGCCTTGATTTTTTAGAGGACACCTATGAAGGGGGTGGGTCGCGAGATTGTGTCCCGGGGGATGTTCTGGATCTCTTGCCTTCAGATCCATTTGGAATGGATATGAGTACCACTTTTACTGCGATCACTGGCTGGCTGGACGATCTGAATGTAGACTATGGTGGTGGTGGTGGTGGTGGCGGTGGTGGTTCTGGAAGAGATGAGAGAGTTTTAGTTGATGAGAGTAATCAGCTTTTTGCTGGATTGAACTATATTTGGAACAATGCTTTTAGGCTCCAGTCGTTTCCCCATGGAAATGAAGGAATTGTTCATAGTTCTGGTGAGCGGGGGGGATTCAGTGAGTGGTCTGATGGGAGAAACGTAGGTGGTTTGTCCTGCCATACTGATCCTCAATCATCATATGTTGTGGATACAATTCAGACCCTTGGTATTGAACCTGAAATTTCTGGAGGGGGATTTGGTTCGTGGTCCGATGAAAGAAATGCAGGTGGTTTATCCTGCCATACTGATCTTGAATCACCATTTGTTCTGGATACAATTCAAACTCTTGGTATTGAACCTGAAATTTCAGGAGGGGGATTCGGTGCATGGTCCGATGGGAGAACAGCAGGCTGTGTATCTTTCCGTACTGATCTTGAGTCACCACGACACGTTGTGGATACGATTCAGGCTTTTAGTATTGAGCCTGAAATTTCTGGAGGGGGATTTGGTGCGTGGTCTGATGGGAGAACAGTGGGCTGTGTATCTTTACGTACCGATCTTGAGTCGCCACGACATGTTATGGATACAATTCAGACTCTTGGTATTGAGCCTGAAATTTCAGGAGGGGGATTCGGTGCATGGTCCGATGGGAGAACAGCAGACTGTGTATCTTTCCGTACTGATCTTGAGTCACCACGACACGTTGTGGATACAATTCAGACTCTTGGTATTGAGCCTGAAATTTCAGGAGGGGGATTCGGTGCATGGTCTGATGGGAGAACAGCAGGCTGTGTATCTTTCCGTACTGATCTTGAGTCACCACGACACGTTGTGGATACAATTCAGACTCTTGGTATTGAGCCTGAAATTTCAGGAGGGGGATTCAGTACGTGGTCTGATGGGAGAACAGCAGGCTGTGTATCTTTCTGTACTGATCTTGAGTCACCACGACATGTTGTGGATACGATTCGGACTTATAGTATTGATCCTGAAATTTCTGGTAGGGGATTCGGTGCGTGGTCTGATGGGAGAACAGCAGCCTGTGTATCTTTACGTACCGATCTTGAGTCACCACGACATGTTGTGGATACGATTCAGACTTATAGNCACGTTGTGGATACGATTCAGGCTTTTAGTATTGAGCCTGAAATTTCTGGAGGGGGATTTGGTGCGTGGTCTGATGGGAGAACAGCAGGCTGTGTATCTTTACGTACCGATCTTGAGTCACCACGACATGTTGTGGATACGATTCAGACTTATAGTATTGATCCTGAAATTTCTGGTAGGGGATTCGGTGCGTGGTCTGATGGGAGAACAGCAGGCTGTGTATCTTTACGTACCGATCTTGAGTCACCACGACATGTTGTGGATACAATTCAGACTTTTAGTATTGAACCTGAAATTTCTGGAGGGAGATTTGGTGCGTGGTCCGATGGGAGAACAGCAGGCTGTGTATCTTTACGTACCGATCTTGAATCACCACGACATGTTGTGGATACAATTCAGAATTTTAGTATTGAACCTGAAATTTCTGGAGGGGGATTTGGTGCATGGTCTGATGGGAGAAGAGCAGGTGGTGTATCTTGCCATACCGATCCCGAATCACCACCATATTCTCTGGATATAATCCGTACTCTTAGTATCGAGCCCGAAATTTCTGAGGTGCAACCTGTAGTTCTTGAAGAGGGAAATTGTGTCTCTTCGGATGCAGGCGAACCTCCTCATGCAGCTTTAAATTTTGTGCTCGGTTATCTGGGAACGCGGGAACTTCTCGTTATTGAATCGGTTTGCAAGTCCCTGCAGTCAACTGCAGAAGACGACCCTTTCTTTTGGAGAAACATTAACATATGTGGAAAGGTGGATGTGAAAATTACAGACGACATTCTCTTAAAATTGACTAGCAAGGCTCAAGGTGGTCTGGAAAGTCTGAGCCTTGTGAACTGTGTAATGATAAGTGATAATGGTCTCAACGAGGTTCTTTTCAATAATCCTAAGGTCACAAAGTTATGTGTTCCGGGATGCACGAGGCTCACCATTGGAGGCATTGTAGATAGTTTGAAGGCCTTCAAGTTGAAAGGTAGACCGGGATTGAAACATCTAAGTATAGCAGGAATGTATGGAGTAACAGAAGCTCATTTTAAAGAGTTGGAGAAGCTGTTATTAGGAACTGACAACTTGACTCAGCTAAACACCCACGAACCTCGATTCTATCGGGGTGGAATTCATTTTCCATCGTGCAACGATGGACGTGCCATCGACATAGAACGATGCCCGAAATGCATGAACATGAGGATTGTTTATGACTGCCCGGTGGTTGGGTGCAAGGGAATAAAAGAAGGCGACACCGACCCGAACGCGAACGCACAGAGATGCAGGGGATGCACGCTTTGTATAGCTCGATGCAATTGGTGTGGACGTTGTATCGACGAGACAGTACACGAGGAGACGTTTTCTCTGGATTTGCGTTGCATTGACTGTGGGAAGAAGATATCCAAATGTGAATAG 2871 45.98 MALNFSYRPIFPAHLSEENSVSPMSISGGFVVDGAPERNSDVYGMSWLINRELENCLDFLEDTYEGGGSRDCVPGDVLDLLPSDPFGMDMSTTFTAITGWLDDLNVDYGGGGGGGGGGSGRDERVLVDESNQLFAGLNYIWNNAFRLQSFPHGNEGIVHSSGERGGFSEWSDGRNVGGLSCHTDPQSSYVVDTIQTLGIEPEISGGGFGSWSDERNAGGLSCHTDLESPFVLDTIQTLGIEPEISGGGFGAWSDGRTAGCVSFRTDLESPRHVVDTIQAFSIEPEISGGGFGAWSDGRTVGCVSLRTDLESPRHVMDTIQTLGIEPEISGGGFGAWSDGRTADCVSFRTDLESPRHVVDTIQTLGIEPEISGGGFGAWSDGRTAGCVSFRTDLESPRHVVDTIQTLGIEPEISGGGFSTWSDGRTAGCVSFCTDLESPRHVVDTIRTYSIDPEISGRGFGAWSDGRTAACVSLRTDLESPRHVVDTIQTYXHVVDTIQAFSIEPEISGGGFGAWSDGRTAGCVSLRTDLESPRHVVDTIQTYSIDPEISGRGFGAWSDGRTAGCVSLRTDLESPRHVVDTIQTFSIEPEISGGRFGAWSDGRTAGCVSLRTDLESPRHVVDTIQNFSIEPEISGGGFGAWSDGRRAGGVSCHTDPESPPYSLDIIRTLSIEPEISEVQPVVLEEGNCVSSDAGEPPHAALNFVLGYLGTRELLVIESVCKSLQSTAEDDPFFWRNINICGKVDVKITDDILLKLTSKAQGGLESLSLVNCVMISDNGLNEVLFNNPKVTKLCVPGCTRLTIGGIVDSLKAFKLKGRPGLKHLSIAGMYGVTEAHFKELEKLLLGTDNLTQLNTHEPRFYRGGIHFPSCNDGRAIDIERCPKCMNMRIVYDCPVVGCKGIKEGDTDPNANAQRCRGCTLCIARCNWCGRCIDETVHEETFSLDLRCIDCGKKISKCE 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8932623 8935851 - CmoCh18G007100.1 Cmo18g00710 402483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00710 956 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 1 956 - -
Cmo18g00710 956 PANTHER F-BOX PROTEIN SKIP14 1 956 - -
Cmo18g00710 956 Gene3D Ribonuclease Inhibitor 694 892 IPR032675 -
Cmo18g00710 956 ProSiteProfiles F-box domain profile. 689 736 IPR001810 GO:0005515
Cmo18g00710 956 SUPERFAMILY RNI-like 745 855 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00710 - - - cmos:111449320 1939.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01018 Cmo-Chr15:5957913 Cmo18g00710 Cmo-Chr18:8932623 8.88E-44 dispersed
Cmo12g00040 Cmo-Chr12:223452 Cmo18g00710 Cmo-Chr18:8932623 1.17E-39 wgd
Cmo18g00710 Cmo-Chr18:8932623 Cmo04g01908 Cmo-Chr4:9725158 4.12E-30 wgd
Cmo18g00710 Cmo-Chr18:8932623 Cmo05g00074 Cmo-Chr5:288141 9.96E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1136 . . Bda01g02193 . Bpe13g00519 . Bma14g01878 Bma15g00246 . Cmo18g00710 . Cma18g00723 . Car18g00669 Sed06g1724 Cpe09g00566 Cpe01g01595 Bhi07g01864 Tan04g0101 Cmetu10g0075 . Hepe10g0079 . . . . . . . . . Cone13ag1120 Cone19ag1105 Cone8ag0721 . Lsi04g00650 . . Cme10g00629 Blo06g00819 . . . . . Bma01g00025 . . . . Cma04g01812 . Car04g01824 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012567 0 2 0 0 0 1 2 1 1 1 0 1 2 1 1 1 1 0 2 1 1 0 1 1 1 1 1 2 3 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00710 Cmo_Chr18 FPKM 11.52331 12.119117 2.407972 2.00115 4.838604 5.121387 5.676534 2.893594 2.697981 3.089461