Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00713 ATGTCTGAGAATCATGATCCAGAGCAGTCGCTGCTGAGTTCAGGAACTGGAGCTGAAGATGGAAATAATGGGGTGGAAATTGTGGAAATTACGGTTAATGATGGTGTTGTGGAGTCATCCTCTGAGACGGCCGCGGACATTGTTTCGGAGAATGACTCCGTTTTGCAGTCCTCTGAGATATCCAGTGGATTTGTCCCGTCCGAACCGAACCAGGGATTGGTAATATCGCCAGAGAGTCCTCGAACCGAAGGTGCAGAGAACTCGCCACAAGATGACTCCGATGATATTGTAATAGTCGAAGATGTTGGAAAAGAAGATATGTTTGTGGACTGCCCGGACGAGTTGGTTGGCAATGCTGATATCAGAGAAGCAGTAGCAGCTGCTGAAACTCAAGGTAGTTTGACGGAGGAAGCGCCTTCTGATACGCAGGAATTACAGTATGAGGTAGAAAAAGTTTCTTTTATACACGAGGTCGAAAATACGAGGGCCACTCTGAATGAGACCATTTTTGAGAAAGAAAATGTCATACAAGATTTTGAGGAAGAAAGAGAAGCTTTTGTGCAAGAACTTCTTAGCATTTGTCGCCAATTAAAGACTGCTACTAATCAACAGTCATTGTTCAATATTACTGGCAGTCAGTTGAACGAGAGTGTTCATTTGTATGGAATCGAGCAGGTTGAAGAGAACACTTCGGTTACTAATTCCACATTGAAAGACCTAATAAATGAATGCTCACAATTGGTTAATAGGACTTTAGATGAACGGTTGCAGTACGAGGCTACTATAGGAGAACTGCGTAATAGCCTCTTAATGAAGGATCAAGAGATTGAATATCTTAATGCAAAGGTTGTCGAAATTTTGGTGACTGATGAAGTTGTTCGCTCTTATGCAAATTCAATTGAAGATTCTATGAAAATTTCGTTAGAGAAGGAGAGGGATACGAATGCCACATTAGACAGGGTGCTAGCTTCTGTCAACTCAGTATTGAATCAGCAAGATCTTCCTGGCGATTCTACATCTGAGAAAACAGTTCTTGTTGAAAGAAGCGCTTCTCTGTTGGTTGATAATTATAAAAAAATCCTTCTGGAAATCAATCAACTCCAAAAATGTTTATCTGGGGCAGAGTCCGACACCGTCTTTGCAGGATTGGAAACGATTTTGGGCTCTGCTTGTGATGAGTTAATTGAGCTCAAAGCTAAAGAGGTAAGCAATGTTGCAAAAATGCATCAACTGGAAGATGAAAATAGAAGATTGGCTGTTGAGCTAGACAATTACAGATTGACAGTTGAGACTGTTAATGCAGAACTTGAAAAAGCAAAAAGTGAGCTGGAACAGGAAATGATGAGGGGTGCTAGTACCAAAGAGAAGCTAAAAATGGCTGTGACAAAAGGCAAGGCATTAGTACAGCAACGTGATGCATTAAAACAGTCTCTAGCTGACAAAGGTCTTGAGCTTGAAAAATATTCTATCGAATTACAAGAGAAATCAAATGCCTTGGAGGCTGCAGAACTAATTAAGGTTGACTTGGCTAAAAATGAAAATTTAGTTGCATCACTGCAGGAAAATTTGTTGCAAAGGAATACGGTCCTTGAAACATTTGAGGATATCATATCTCAAGTTGAAGTTCCTCGTGAACTCACGTCAATGGATAGTATAGAAAGAATCAAGTGGCTTGTGGATGAGAAGAAGGTCCTGGAGGCTATTTTATTGGAGTTTCATAAACTAAAAGATAATCAAAACTTATCTGATTTTCCAGATTTGATTGCACCTTATGACCTGAAATCTTCCGTCAGTTGGCTTAAGGAATCATTTTTTCAGGCTAAAGATGAAATAATGATCTTGCGAGATGAACTTGTTAAAACAAAAGAAGCAGCATGTGGAGAGATTGACCGCATAAGTGCATTACTTTCAATTGAATTACAGGAAAAGGACTATATCCAGGAGGAGTTGGATGATCTGTTAAGAAAACACGAAGAGGTCATGATAAAAGAGCATCAGGCTTCGTTGGAGAAGGCTCAAATCATAAAAATGTTACAAGAAGAATCTGGAATGATAACAGATGATGGAGGGGTCAGTGAAATTTCGTTGGACTTAAACTTGCTTGCTTACAGATGCTTTCAGAGGATAAAAGAGCAGGCCAGTGTTGCTGCTGAAGTTTCTAGTGAATACGTAGAATCTTTTGCAAAGGTTCAAACTCTTTTGTATGTTAGTCATCAGGATTTGATGCTCCATGATATACTCCTAGAAGAGGAGTCTTCTAATATCAGCAATTACTCAACTAGATTAAGATCAGTATCTCAAGAACTTAGAGAAGTGAAAGAGGAAAATGACTCTTTGCAGAGAGATATCCAAAGATCAGAGGAGAAATATGCCATGCTAAGGGAAAAGTTGTCCTTGGCAGTCAAGAAAGGCAAAGGACTTGTTCAGGACAGGGAAAATATGAAAAGTGTCTTAGATGAAAAGAACATAGAAATAGAGAAGTTGAAATTACAATTAGATAGTCTAGAATCAACAGTTGATGATTGCAGAAATCAAATCAATTTGTTGTCTATTGATACACAGCGCATTCCAGAGTTGGAGGCTGATCTTGATATTTTGAAGGGAAAATGCAATCAATATGAGCAGTTCTTATTAGAGAGCAATAATATGTTACAGAAAGTAATTGAATCAATTGATGGAATTGTTCTTCCCATTAATATAGTTTTTGAAGAGCCTATAGCTAAGGTGAAGTGGATTGCAGACTACATTAGGGAATCACATGATGCTAAGATATGTAAAGAACAAGAATTGGAGAGTATTAAAGAGGAATTAATTACTATGGAAAGTAAATTAAGAGATGCTTTAGCTGCTATAAACTCATTGGAAATTGCATTATCATCTGCTGAGAAAAACATTTTTCAACTTTCTGAGGAGAAAAAGGAAATAGAATCTAGTAAGATGCACATTGAACATGAATTACAGAAAGCATTAGATGAAGCCTATTCACAGTCCAGCAAGTCCGCAGAGACTTATTCATCCATGAACCTACTTCAAGAATCATTATCACAGGCAGAAAATAAAATACTTGCGCTTGTCAAAGAGAAAGAAGAAGCTGAAGTTTGTAAAGTCACTGTAGAGATGGAGTCTAAAAAAGTAAAGGAGGAAGTGGCTATTCAGACAGATAAATTGGCAGAGGCCCAGAGAACTATAAACACGTTAGAAAAGACATTAATTGAGCTTGAGACAAATGTTGCTTTGCTGAATGAACGGAATGCTGAAGCACAAAGTGCTATAGAGAAGCTAGAAACTGAGCGAAAGATATTGCAAGAGGAAGTCAGCTCTCAAGAGAGCAAAGTTGTTGAGGCAGTTGAATCAATAACATCTTTGGAAAATGCATTACGTAAGGCAGAAAGTAAAATTTCTATAATTGAAGGTGAGAGGAAAGATTCTGAAAATGAAATATTTGCTCTAAATTCCAAATTAAATGCATGCATGGAAGAGTTGGCCGGGACTAGTGGCAGCTTAGAGAGCAGATCTATAGAGTTTGCCGGCTACCTCAATGATCTTCATAAGTTTATTGCAGATGAGACATTGTTGACTGTGGTGACAGGATGCTTTGAGAAGAAATTTGAGAGACTAAGAGAGATTGATATCGTTCTGAAGAACACTAGTGATTGTTTTGTTAACAGCGGTCTAATAGGTTCTCATAACCATCATGCTGTTAAGGATCCGCATGCTATGGAGTCCCTCTCTCATGAAAAGCTCCTTGATTTTGCTGCTGAAATTGAAAGTGGTAAGGTGGTTGTTGAAGGTGATGCTGGCAACATTTCTTCATCTTTTAGAAAGATTATGGAAGGAATCTGGTTAAAGAACAAAAGATTCACAGATTATTTTGAAGGTTTCTCCTCTTCAATGGACGGGTTTATGGCTGATCTGTTAAAAAAAGTTGAAGCAACAAGGGAGGAAGTAGTTTTTGTGTGTGGACACGTTGAATCCTTGAAAGAGATGGTGAAGAATCTCGAAATGTATAAACAGGAACAAGAAAATACCAAAGTGATGCTGGAAGATGATGTTTCACTTTTATTGTCTGCCTGTGTTGAAGCAACAAAAGAACTTCAGTTTGAAATGACCAACCATCTACTTTTCCTCGACTCTATTCCCGAACTTGACAACTTGAAGGATAGCATACCCATGGAAAGTAGTGAAACTAATGGAGCTTCAGCCGCAGAGTCTCCCGCAAATTCTACTAGAAGCAAGTCAGCTGCTGCTGCAGAAAAATTATTGGCTGCAAGTAGAAAAGTTCAATCTATGGTTAAACAGTTTGAGAGCGTCATTAAGGGTGCTGCTGCTAGAATTCAAGATACACAGCATATATTAGAAATAACTGAGGCAACTACTGAGAAAGTTAGAGAGGAAAGGGACTTGAACAAACATATGGTAGTTAAGTTGGAGGCTGATTTACAACTATTACAGAATTCCTGTGATGATCTGAAGCGTCAACTGGAGGTCTGTCAGGCAAATAAAGAAAAGTTGAAAGAAAGAGAGGCTGAAGTTTCATCATTGTATAGTAGTTTGGTGAAAGAACAAGAAGACTGCGTTTTGTCAGCAATGCAAATGAAAGCCCTCTTTGAGAAAGTTAGAAGAATCGAGTTCCTTTTTCAAGAATCAGAATATCAAGATCTGGAACAATATGATTCACCTGATGTAAAGAAGCTCTTTTACCTAACTGATTATGTTTCTGAGTTACAAAATCAGCTAAAATTATTATCTCATGACAACCAAAAGCTGCAGTCTACAGTGACTACACAAACACTTGCAATTGAACAGCTAAAAGAGGAGGTTGATAGAGCATCGAGGGATCATCTCGATTTAGAGGAGTTGAAGAAAGATCTCTCAGAGCTTTCTTATTCTTTGGAACAACATACTAGTTTGTTGGGTAGTAAATATAGTGGAGATTCTGAGTCCGATGGGTTGAAGGAACTAGTAAGAACTATAGGAAGACAGGTCCTGGATTTGCTTTCAGAATCTGAAAATTCAAAAACCAAAGTTGAGGAACTGAGTAAGAAGTTAATAGGTAGCCAAAAGGTTGTGGATGAACTAACTACCAAGAATAAGCTACTTGAAGAGTCACTTCATGGCCGGACATCTCAATCAGAGATCATAAAAGAAAGGGGCATCTTTGAAGCACCATTTCCTTCTGGATCAGAGATATCAGAAATTGAAGAAGCGGGACCAGTCGGGAAAAGTACAATACCGCCTGTTCCACCAGCCTCAGCTGCCCATGCTCGAATGTTGCGAAAAGGTTCAACTGATCATCTTGCGATTGATGTAGAAACAGAATCCGATCGTTTAATAGGAAGTGCCATGGAAATTGATAAAGACAAAGGTCATGCGTTCAAATCTCTCAATTCATCAGGTCTCATCCCAAGACATGGAAAACTTGTTGCAGATCGCATTGATGGAGTTTGGGTCTCCGGCGGTCGAATTCTAATGAGTCGTCCAGGCGCAAGGCTAGGTCTCATTACCTACTGGTTCTTGATACACATATGGTTACTGGGAGCCATTTTGTGA 5550 38.85 MSENHDPEQSLLSSGTGAEDGNNGVEIVEITVNDGVVESSSETAADIVSENDSVLQSSEISSGFVPSEPNQGLVISPESPRTEGAENSPQDDSDDIVIVEDVGKEDMFVDCPDELVGNADIREAVAAAETQGSLTEEAPSDTQELQYEVEKVSFIHEVENTRATLNETIFEKENVIQDFEEEREAFVQELLSICRQLKTATNQQSLFNITGSQLNESVHLYGIEQVEENTSVTNSTLKDLINECSQLVNRTLDERLQYEATIGELRNSLLMKDQEIEYLNAKVVEILVTDEVVRSYANSIEDSMKISLEKERDTNATLDRVLASVNSVLNQQDLPGDSTSEKTVLVERSASLLVDNYKKILLEINQLQKCLSGAESDTVFAGLETILGSACDELIELKAKEVSNVAKMHQLEDENRRLAVELDNYRLTVETVNAELEKAKSELEQEMMRGASTKEKLKMAVTKGKALVQQRDALKQSLADKGLELEKYSIELQEKSNALEAAELIKVDLAKNENLVASLQENLLQRNTVLETFEDIISQVEVPRELTSMDSIERIKWLVDEKKVLEAILLEFHKLKDNQNLSDFPDLIAPYDLKSSVSWLKESFFQAKDEIMILRDELVKTKEAACGEIDRISALLSIELQEKDYIQEELDDLLRKHEEVMIKEHQASLEKAQIIKMLQEESGMITDDGGVSEISLDLNLLAYRCFQRIKEQASVAAEVSSEYVESFAKVQTLLYVSHQDLMLHDILLEEESSNISNYSTRLRSVSQELREVKEENDSLQRDIQRSEEKYAMLREKLSLAVKKGKGLVQDRENMKSVLDEKNIEIEKLKLQLDSLESTVDDCRNQINLLSIDTQRIPELEADLDILKGKCNQYEQFLLESNNMLQKVIESIDGIVLPINIVFEEPIAKVKWIADYIRESHDAKICKEQELESIKEELITMESKLRDALAAINSLEIALSSAEKNIFQLSEEKKEIESSKMHIEHELQKALDEAYSQSSKSAETYSSMNLLQESLSQAENKILALVKEKEEAEVCKVTVEMESKKVKEEVAIQTDKLAEAQRTINTLEKTLIELETNVALLNERNAEAQSAIEKLETERKILQEEVSSQESKVVEAVESITSLENALRKAESKISIIEGERKDSENEIFALNSKLNACMEELAGTSGSLESRSIEFAGYLNDLHKFIADETLLTVVTGCFEKKFERLREIDIVLKNTSDCFVNSGLIGSHNHHAVKDPHAMESLSHEKLLDFAAEIESGKVVVEGDAGNISSSFRKIMEGIWLKNKRFTDYFEGFSSSMDGFMADLLKKVEATREEVVFVCGHVESLKEMVKNLEMYKQEQENTKVMLEDDVSLLLSACVEATKELQFEMTNHLLFLDSIPELDNLKDSIPMESSETNGASAAESPANSTRSKSAAAAEKLLAASRKVQSMVKQFESVIKGAAARIQDTQHILEITEATTEKVREERDLNKHMVVKLEADLQLLQNSCDDLKRQLEVCQANKEKLKEREAEVSSLYSSLVKEQEDCVLSAMQMKALFEKVRRIEFLFQESEYQDLEQYDSPDVKKLFYLTDYVSELQNQLKLLSHDNQKLQSTVTTQTLAIEQLKEEVDRASRDHLDLEELKKDLSELSYSLEQHTSLLGSKYSGDSESDGLKELVRTIGRQVLDLLSESENSKTKVEELSKKLIGSQKVVDELTTKNKLLEESLHGRTSQSEIIKERGIFEAPFPSGSEISEIEEAGPVGKSTIPPVPPASAAHARMLRKGSTDHLAIDVETESDRLIGSAMEIDKDKGHAFKSLNSSGLIPRHGKLVADRIDGVWVSGGRILMSRPGARLGLITYWFLIHIWLLGAIL 1849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8955919 8963199 + CmoCh18G007130.1 Cmo18g00713 402486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00713 1849 MobiDBLite consensus disorder prediction 39 94 - -
Cmo18g00713 1849 Coils Coil 811 852 - -
Cmo18g00713 1849 Coils Coil 162 182 - -
Cmo18g00713 1849 MobiDBLite consensus disorder prediction 1 20 - -
Cmo18g00713 1849 Coils Coil 1323 1350 - -
Cmo18g00713 1849 Coils Coil 1042 1146 - -
Cmo18g00713 1849 SUPERFAMILY Tropomyosin 930 1175 - -
Cmo18g00713 1849 Coils Coil 1572 1637 - -
Cmo18g00713 1849 Coils Coil 485 505 - -
Cmo18g00713 1849 PANTHER BNAA09G28150D PROTEIN 1149 1849 - -
Cmo18g00713 1849 PANTHER BNAA09G28150D PROTEIN 82 978 - -
Cmo18g00713 1849 Coils Coil 1473 1507 - -
Cmo18g00713 1849 Coils Coil 748 803 - -
Cmo18g00713 1849 Coils Coil 1007 1034 - -
Cmo18g00713 1849 Gene3D - 1037 1210 - -
Cmo18g00713 1849 Coils Coil 923 992 - -
Cmo18g00713 1849 MobiDBLite consensus disorder prediction 1 26 - -
Cmo18g00713 1849 MobiDBLite consensus disorder prediction 39 86 - -
Cmo18g00713 1849 PANTHER - 82 978 - -
Cmo18g00713 1849 PANTHER - 1149 1849 - -
Cmo18g00713 1849 Coils Coil 408 453 - -
Cmo18g00713 1849 MobiDBLite consensus disorder prediction 1389 1412 - -
Cmo18g00713 1849 MobiDBLite consensus disorder prediction 1386 1412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00713 - - - csv:101218359 2521.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01902 Cmo18g00713 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01621 Cmo-Chr1:12351059 Cmo18g00713 Cmo-Chr18:8955919 1.69E-06 dispersed
Cmo09g00521 Cmo-Chr9:2429676 Cmo18g00713 Cmo-Chr18:8955919 1.73E-06 dispersed
Cmo18g00713 Cmo-Chr18:8955919 Cmo04g01902 Cmo-Chr4:9691913 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1114 . . . . . . . . Cmo04g01902 Cmo18g00713 . Cma18g00726 . Car18g00674 Sed06g1718 Cpe09g00563 Cpe01g01587 Bhi07g01850 Tan04g0116 Cmetu10g1236 Lac13g0100 Hepe10g1555 . . Cla05g02625 Cam05g2815 Cec05g2851 Cco05g2882 Clacu05g2819 Cmu05g2667 Cre05g2783 . . Cone8ag0714 . Lsi04g00640 . . . . Blo11g00999 . . . . . . . . . Cma04g01803 . Car04g01816 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00713 Cmo_Chr18 FPKM 6.718898 7.20543 4.024728 3.679079 2.719751 3.660889 3.891654 7.781601 7.74593 9.997166