Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00716 ATGAGGAATTTATACAGGCTTGCTTTGTTTGTTCTGTGTAGATTTAAGAGTGGAAGTTTGTTGAACAATCGGATTAATCTAGTGATGTCTTTGTTCTATGTGTTCTTGAAATCTCAGCCATTTCTATCAAGTTTGGGCACTGCAGAGCCTTTGGCAGTGCCCATGGATGCCACGACAAGCGAAACGGCGCCTATACAATTCCATACCATTCCCGATCAGTCGGTTTCGAGTATCGTTACCAATCCAGCGTCGACATTTCCTTTATCGAAACACCATTGCTTTGGGGAATCCTGCCCCGGTGAATTCCCCTTAGCTGCTAATCCTTCTATTGTTCTTCATGTCTTGACAGCATGTAACTTGGATCCGAAAGACCTTGCGAAGTTAGAGGCGACGTGTTCGTTCTTTAGACAGCCTGCGAATTTCGCTCCTGATTATGAATTATCGATTTCGGAACTTGCTGCGTTGGATATGTGTCGAAAGAGAGCTATATTTAAACCTATGACAACAGAGCAACAGCAAGGTTTGAAGCAAAGATGTGGTGGTTCATGGAAACTGGCATTGAGGTTTTTACTGGCTGGAGAAGCTTGTTGCAGAAGGGAGAAATTCCTGGCAATAGCTGGACCCGGTCATAGCATCGCGGTTACGTCGAAAGGAGCTGTTTACTCGTTTGGTTCCAACAGCTCAGGACAGCTTGGACATGGTACGACCGAAGAAGAATCACGACCTCCTCGCCTAATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGTCCGGGAGGACAATGTTAATCAGCGACGCCGGGCGTGTTTATGCATTTGGCAAGGACTCATTTGGTGAAGCTGAGTATGGAGTTCAAGGAGCTCAAGGAGCTCAAGTCGTTACGACACCGAAGTTGGTCGAATCGCTTAAGGATATATTTGTGGTGCAAGCTGCAATTGGCAATTTCTTCACTGCTGTACTATCAAGAGAAGGTAGAGTGTACACATTTTCTTGGGGAAGTGAGAGTAGGCTCGGTCATCAAACCGAACCAAACGACTTGGAACCACGGCCATTGACGGGAGCCTTAGAGAACGCTCCCGTTGTTCAAATTGCTGCTGGATATTGCTATCTTCTTGCTCTAGCTTGTCATCCTAATGGCATGTCAGTGTACTCTGTAGGGTGTGGACTAGGTGGGAAGCTCGGTCACGGTTCAAGAACGGACGAGAAACACCCACGACTCATCGAACAATTTCAGATTCTGAATCTTCAGCCAGTCGTGGTTGCTGCTGGTGCTTGGCACGCAGCCATTGTAGGTCGGGACGGTCGAGTTTGTACGTGGGGTTGGGGTCGTTACGGGTGCCTGGGACATGGAAATGAGGAGTGTGAATCTTCTCCCAAAGTTGTGGAAGCATTAAGCAATGTCAAAGCAGTTCATGTTGCTACAGGAGATTACACAACCTTTGTAGTATCGGACGATGGTGACGTGTATTCTTTCGGTTGCGGAGAATCCGCTAGCCTGGGGCATAACAATGGCGTCGCCTTCGCTGCCGCCGCCGCCGATGGAGAGCAGGGGAATCGGCACCCTCACATTTTAAGCCCGGAACTGGTAACGTCTCTGAAGCAAATTAACGAGCGGGTAGTTCAGATTAGCCTCACTAACTCAATTTACTGGAATGCACACACCTTCGCACTGACCGAGTCGGGAAAGTTGTATGCATTTGGTGCTGGTGACAAAGGGCAGCTCGGAGTCGAACTTATGGCGAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGATCTAAATTAA 1803 47.98 MRNLYRLALFVLCRFKSGSLLNNRINLVMSLFYVFLKSQPFLSSLGTAEPLAVPMDATTSETAPIQFHTIPDQSVSSIVTNPASTFPLSKHHCFGESCPGEFPLAANPSIVLHVLTACNLDPKDLAKLEATCSFFRQPANFAPDYELSISELAALDMCRKRAIFKPMTTEQQQGLKQRCGGSWKLALRFLLAGEACCRREKFLAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPPRLIRSLQGIRIIQAAAGSGRTMLISDAGRVYAFGKDSFGEAEYGVQGAQGAQVVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSESRLGHQTEPNDLEPRPLTGALENAPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQILNLQPVVVAAGAWHAAIVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNNGVAFAAAAADGEQGNRHPHILSPELVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELMANQTERGNPERVDIDLN 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8981016 8984509 + CmoCh18G007160.1 Cmo18g00716 402489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 327 IPR000408 -
Cmo18g00716 600 SUPERFAMILY RCC1/BLIP-II 205 507 IPR009091 -
Cmo18g00716 600 Gene3D - 381 599 IPR009091 -
Cmo18g00716 600 Gene3D - 204 380 IPR009091 -
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 565 600 IPR000408 -
Cmo18g00716 600 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 55 600 - -
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 490 564 IPR000408 -
Cmo18g00716 600 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 55 600 - -
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 437 IPR000408 -
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 218 270 IPR000408 -
Cmo18g00716 600 Pfam Regulator of chromosome condensation (RCC1) repeat 437 486 IPR000408 -
Cmo18g00716 600 Pfam Regulator of chromosome condensation (RCC1) repeat 386 433 IPR000408 -
Cmo18g00716 600 Pfam Regulator of chromosome condensation (RCC1) repeat 327 376 IPR000408 -
Cmo18g00716 600 Pfam Regulator of chromosome condensation (RCC1) repeat 489 547 IPR000408 -
Cmo18g00716 600 Pfam Regulator of chromosome condensation (RCC1) repeat 217 267 IPR000408 -
Cmo18g00716 600 PRINTS Chromosome condensation regulator RCC1 signature 271 287 IPR000408 -
Cmo18g00716 600 PRINTS Chromosome condensation regulator RCC1 signature 220 236 IPR000408 -
Cmo18g00716 600 PRINTS Chromosome condensation regulator RCC1 signature 314 330 IPR000408 -
Cmo18g00716 600 PRINTS Chromosome condensation regulator RCC1 signature 485 506 IPR000408 -
Cmo18g00716 600 PRINTS Chromosome condensation regulator RCC1 signature 427 445 IPR000408 -
Cmo18g00716 600 PRINTS Chromosome condensation regulator RCC1 signature 330 344 IPR000408 -
Cmo18g00716 600 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 380 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00716 - - - cmos:111449612 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00866 Cmo-Chr9:4469302 Cmo18g00716 Cmo-Chr18:8981016 1.34E-15 dispersed
Cmo18g00716 Cmo-Chr18:8981016 Cmo11g00884 Cmo-Chr11:4528997 5.58E-15 dispersed
Cmo18g00716 Cmo-Chr18:8981016 Cmo04g01895 Cmo-Chr4:9667972 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00716 Cmo_Chr18 FPKM 14.597939 15.32095 0.755495 0.25622 0.600587 0.499825 0.490876 1.390402 1.026502 0.964672