Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00721 ATGAGTGTCCGATCATGGCTACTCTCCTGTGCCACCGCCGCCGACTCCAATACGCCGCCTCAATCCTCCTCCTTCTCAATTTCCGACACGTCGGTCAACTCTTCATCGTCGTCGTCGACACCGACTTCCGACACTAGCTGCTCCACTCTCCAAAGCAATCTCTCCCTTCAATCCCAACCGTCCATTCCATCTCTCCAAACTCTCCCCACCGTCAACAATACCGGAAACGTCGCCGTTTCTCAACTTCACCTCGCCTCTTTCAAGCTCCCAATCTCCCATCTCGCCGTCCATGGTCCCCACCTCTATGTCGCCACTGCTCACGAAATCAACGTCTACGATCGATCCACGTATTCCCACGTAGCCTCAATCAACGCTCGAGATTCCTCCTCCGGCGCCGTCAAGGGAATCGCCTTTCTCAACGCCCAAATCCTTACTTCTCATCAAGATGGAAAAATCCGCGTCTGGAATTTAACGAATAATCAATTCAAAAAGGTCAACACTCTCCCGACAGTCAACGACCGCCTCCGCCGCTTCATACTCCCGAAAAATTACGTCAACGTCCGCCGTCACAAGAAAGTCCTCTGGATTCAACACGCCGACGCCGTAACTGGACTCGCCGTGAACAGAAATTCGTTTTACTCTGTTTCTTGGGATCGGAGTTTGAAAATCTGGCAAGGCTCCGACCACCGCTGCGTCGAGTCCGTCAAGGCAGCGCACGAGGACGCCATAAACGCAGTAGCCGTCTCCGCCGCGGGGATTGTGTATACCGGATCGGCCGATCGGAGAATCAGAGTATGGTCGAAACCCGCGGCGGAGAAACGGCATATTCTGATAACGACTTTAGAGAAGCACAAATCGGCGGTGAATGCATTGGCGTTAAACGACGACGGTTCATTGCTGTTCTCCGGTGCCTGTGATCGGTCCGTTCTGGTGTGGGAAAGAGAGGACGGCGCGAATCACATGGCGGTGATCGGAGCATTGAGGGGACACAAAAACGCGATTCTCTGTTTGATCTACGTCTCGGCTTTGCTGTTGAGTGGGTCCGCAGATCGAACGGTCAGAATTTGGCGACGTGTAGGAGATGGGAGTTTTAATTGCTTGTCCGTACTGGAGGGTCACCGGAAACCGGTGAAATCCCTGGTGGTGGTTTCCGACGGGTTGTTAAACGGCGTCGTTTCGGTCTGCAGTGGGAGTCTGGACGGTGAACTGAAAGCATGGAAACTCTCGTTTTCGAATCTTAATGGAATATTAAATTAG 1257 52.9 MSVRSWLLSCATAADSNTPPQSSSFSISDTSVNSSSSSSTPTSDTSCSTLQSNLSLQSQPSIPSLQTLPTVNNTGNVAVSQLHLASFKLPISHLAVHGPHLYVATAHEINVYDRSTYSHVASINARDSSSGAVKGIAFLNAQILTSHQDGKIRVWNLTNNQFKKVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNRNSFYSVSWDRSLKIWQGSDHRCVESVKAAHEDAINAVAVSAAGIVYTGSADRRIRVWSKPAAEKRHILITTLEKHKSAVNALALNDDGSLLFSGACDRSVLVWEREDGANHMAVIGALRGHKNAILCLIYVSALLLSGSADRTVRIWRRVGDGSFNCLSVLEGHRKPVKSLVVVSDGLLNGVVSVCSGSLDGELKAWKLSFSNLNGILN 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9005162 9006418 + CmoCh18G007210.1 Cmo18g00721 402494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00721 418 ProSitePatterns Trp-Asp (WD) repeats signature. 143 157 IPR019775 -
Cmo18g00721 418 SUPERFAMILY WD40 repeat-like 96 409 IPR036322 GO:0005515
Cmo18g00721 418 Pfam WD domain, G-beta repeat 365 407 IPR001680 GO:0005515
Cmo18g00721 418 Pfam WD domain, G-beta repeat 278 312 IPR001680 GO:0005515
Cmo18g00721 418 Pfam WD domain, G-beta repeat 197 224 IPR001680 GO:0005515
Cmo18g00721 418 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Cmo18g00721 418 Pfam WD domain, G-beta repeat 325 356 IPR001680 GO:0005515
Cmo18g00721 418 Gene3D - 186 272 IPR015943 GO:0005515
Cmo18g00721 418 MobiDBLite consensus disorder prediction 13 50 - -
Cmo18g00721 418 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Cmo18g00721 418 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Cmo18g00721 418 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Cmo18g00721 418 Gene3D - 273 415 IPR015943 GO:0005515
Cmo18g00721 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Cmo18g00721 418 PANTHER F21J9.19 20 412 - -
Cmo18g00721 418 SMART WD40_4 189 225 IPR001680 GO:0005515
Cmo18g00721 418 SMART WD40_4 116 156 IPR001680 GO:0005515
Cmo18g00721 418 SMART WD40_4 363 407 IPR001680 GO:0005515
Cmo18g00721 418 SMART WD40_4 228 267 IPR001680 GO:0005515
Cmo18g00721 418 SMART WD40_4 274 313 IPR001680 GO:0005515
Cmo18g00721 418 SMART WD40_4 320 357 IPR001680 GO:0005515
Cmo18g00721 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Cmo18g00721 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 267 IPR001680 GO:0005515
Cmo18g00721 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 165 IPR001680 GO:0005515
Cmo18g00721 418 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 412 IPR045182 -
Cmo18g00721 418 Gene3D - 61 185 IPR015943 GO:0005515
Cmo18g00721 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 356 - -
Cmo18g00721 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 356 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00721 - - - csv:101204588 614.764
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g00862 Cmo18g00721 CCT
Cmo15g00862 Cmo18g00721 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00081 Cmo-Chr10:366994 Cmo18g00721 Cmo-Chr18:9005162 5.58E-112 dispersed
Cmo18g00721 Cmo-Chr18:9005162 Cmo09g00176 Cmo-Chr9:787047 4.15E-74 dispersed
Cmo13g00933 Cmo-Chr13:8200896 Cmo18g00721 Cmo-Chr18:9005162 4.18E-10 transposed
Cmo18g00721 Cmo-Chr18:9005162 Cmo04g01891 Cmo-Chr4:9633440 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00721 Cmo_Chr18 FPKM 5.604364 7.331061 0.694704 1.317593 16.937777 22.287401 18.92556 0.0 0.0 0.0