Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00725 ATGGGAAGTAAGAATTCGAAGGAAACGGATCAAAGAGAGTTTGATTCAGATGGGTTTGGGAATTCTTCAACGTGGGGTTATGACAATTATCCTCCACCTTCGCCGTATGTTCAGGAATATTCATATCCACAACGCTTTGATTATGGGTCACAAACACCACTACCACAGAGGAGGTTGGATAGGAAATATTCAAGAATTGCTGACCATTACCAATCCTTGGATGAGGTGACAGCAGCTCTTGCTCAAGCTGGACTAGAGTCCTCTAATCTCATTGTGGGAATCGATTTCACGAAGAGCAACGAGTGGACAGGTTCAAGGTCGTTTAATCGACGTAGTTTACACCACATCGGGAACACACAGAATCCATATGAACAAGCCATATCTATTATTGGACAGACCTTATCAGCTTTTGATGAGGACAACATGATTCCATGTTATGGATTTGGAGATGCATCTACACATGATCAAAATGTCTTTAGCTTTTACGACGATGACAGGATCTGTAATGGATTTGAGGAAGTTTTGCATCGTTACAAAGAAATCGTCCCCAACTTACGACTTGCAGGACCTACATCTTTTGCACCAATCATTGAGATGGCCATGACAATAGTTGAGCAAACTGGTGGTCAGTACCATGTTTTGCTGATAATTGCAGATGGCCAAGTCACAAGAAGTGTCGACACAAATAACGGTCAACTAAGTTCACAAGAACGAAACACCGTCGATGCGATTGTTAGAGCAAGTGAGTACCCGTTGTCAATTATCTTGGTCGGAGTCGGAGACGGGCCATGGGACATGATGAAGAATTTTGACGACAACATCCCAGCTCGAGCTTTCGATAACTTTCAGTTTGTTAATTTCACTGAGATTATGTCAAAAAATGTAAACTCTACCAGAAGGCAGACTGAGTTTGCTCTAGCTGCCTTAATGGAAATACCTTCTCAATATCAGGCTACTCTAGAGCTTGGCCTATTGGGTCGACGACGAGGGAGTTCGCCAGAGAGAGTTCCTCTTCCACCTCCTTTGTACAGCACGACGCCGTTCAACAGCTACCCGAGGACCCCACGAGCCAACAGTTTTCAGACTCGAACACCTTCACATGGTAGATATAACCAAGGAGTTGGCACAACTTCATCCACCAGTTCTCATTATGATAACCAGATTTGCCCCATTTGTCTCACTAATCCGAAGGACATGGCTTTTGGTTGCGGGCATCAGACATGCTGCGACTGCGGAGAAACACTCGAGTCGTGCCCCATCTGCCGAAGCTCTATTCAGACTAGAATAAGGCTTTATTAA 1299 44.34 MGSKNSKETDQREFDSDGFGNSSTWGYDNYPPPSPYVQEYSYPQRFDYGSQTPLPQRRLDRKYSRIADHYQSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGNTQNPYEQAISIIGQTLSAFDEDNMIPCYGFGDASTHDQNVFSFYDDDRICNGFEEVLHRYKEIVPNLRLAGPTSFAPIIEMAMTIVEQTGGQYHVLLIIADGQVTRSVDTNNGQLSSQERNTVDAIVRASEYPLSIILVGVGDGPWDMMKNFDDNIPARAFDNFQFVNFTEIMSKNVNSTRRQTEFALAALMEIPSQYQATLELGLLGRRRGSSPERVPLPPPLYSTTPFNSYPRTPRANSFQTRTPSHGRYNQGVGTTSSTSSHYDNQICPICLTNPKDMAFGCGHQTCCDCGETLESCPICRSSIQTRIRLY 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9022257 9025991 - CmoCh18G007250.1 Cmo18g00725 402498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00725 432 MobiDBLite consensus disorder prediction 1 40 - -
Cmo18g00725 432 SUPERFAMILY RING/U-box 382 428 - -
Cmo18g00725 432 MobiDBLite consensus disorder prediction 1 15 - -
Cmo18g00725 432 SUPERFAMILY vWA-like 89 270 IPR036465 -
Cmo18g00725 432 Pfam Zinc finger, C3HC4 type (RING finger) 386 427 - -
Cmo18g00725 432 Pfam Copine 112 326 IPR010734 -
Cmo18g00725 432 PANTHER COPINE FAMILY PROTEIN 1 1 432 - -
Cmo18g00725 432 MobiDBLite consensus disorder prediction 347 380 - -
Cmo18g00725 432 MobiDBLite consensus disorder prediction 330 380 - -
Cmo18g00725 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 432 IPR013083 -
Cmo18g00725 432 ProSiteProfiles Zinc finger RING-type profile. 389 422 IPR001841 -
Cmo18g00725 432 PANTHER RING-FINGER PROTEIN 1 432 - -
Cmo18g00725 432 SMART VWA_4 87 290 IPR002035 -
Cmo18g00725 432 CDD RING-HC_RGLG_plant 389 432 IPR045317 GO:0061630|GO:0070534
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00725 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101204341 726.857
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02800 Cmo18g00725 CCT
Cmo04g02800 Cmo18g00725 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00674 Cmo-Chr2:4239599 Cmo18g00725 Cmo-Chr18:9022257 4.49E-145 dispersed
Cmo03g00632 Cmo-Chr3:5820727 Cmo18g00725 Cmo-Chr18:9022257 7.16E-149 dispersed
Cmo03g01098 Cmo-Chr3:8891453 Cmo18g00725 Cmo-Chr18:9022257 9.49E-158 dispersed
Cmo04g02800 Cmo-Chr4:20118369 Cmo18g00725 Cmo-Chr18:9022257 0 dispersed
Cmo07g00840 Cmo-Chr7:3945767 Cmo18g00725 Cmo-Chr18:9022257 1.04E-146 dispersed
Cmo10g00088 Cmo-Chr10:389396 Cmo18g00725 Cmo-Chr18:9022257 0 dispersed
Cmo14g00698 Cmo-Chr14:3595991 Cmo18g00725 Cmo-Chr18:9022257 0 dispersed
Cmo15g00380 Cmo-Chr15:1758168 Cmo18g00725 Cmo-Chr18:9022257 0 dispersed
Cmo18g00722 Cmo-Chr18:9013555 Cmo18g00725 Cmo-Chr18:9022257 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00725 Cmo_Chr18 FPKM 22.937002 25.374155 15.906248 14.76163 15.789938 15.440331 16.103233 17.867388 16.685009 15.996376