Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00727 ATGGCGAGTGGTGTTGATGAAGACGCGGATGCTGTGCTCAGCGATGTTGAAGGTGATGATCCGGTGCCTATTGTGATTCAGAATACGTCTCCTGAAGAAATCTCTGTCGAGAGGTTTAGAGAGATTCTTGCGGAGCGCGATCGTGAGCGGAAAGCTCGAGAAGCGGCGGAGAATTCGAAATCGGAGTTGCAAGTATCTTTTAATCGATTGAAAGCGCTTGCACACGAGGCGATTAAGAAGCGCGATGAATGTGGAAGGCAGCGGGATGAGGCATTGAGGGAGAAGGAAGAAGCGTTGAAATTGAATGAAAAGGTTTCGGCGGAGTTGGCTGAGGCGAATAGGCAGAAAGATGAGGTCTCGAGTGTTAGGGATGAGATTGGGAAGCAACTCGATGAGATCTTAAAGGAACGGGATGGTTTGAGATCGGAAATTGGTAATGCATCACATATGCTAGTGACTGGGATTGATAAGATATCCTCAAAAGCGAGCAATTTCAAGAACTTTACGGCTGGTGGGTTGCCTAGGTCGCAAAAATATACAGGATTGCCTGCAGTTGCCTATGGAGTCATCAAGAGAACGAATGAAATCGTTGAAGAGCTTATTAGGCAGATTGACACGACAACTAAGTCGAGGAACGAAACCAGGGAACAAATGGATCTTAGGAATTATGAAATTGCCATTGAGATATCTCAGCTCGAAGCTACGATTAGTGGGCTGAGGGAGGAGGTATCGAAGAAAACTTCCGATATCGAAGATCTGGAGAACACTATCTCCGAAAAGGATAAAAAGATGTCTGAAATTGAAGCAGATCTGTCTGGTAAACTAAACCGGGCCGAGGATGAAGCTTCTGAGTTAAGGCAGCTTACGCAAGATTATGATGATAAGTTAAGGATTTTGGAGGCAAAAATGGAGTCCCAAAGGCCTTTACTTGTTGACCAGTTGAATTTCATTTCAAAAATTCACGACCAAATTTATGATATTGTTAAGATAGTTGATGGCAGTGATGCAGACCATTCTGAATTTTCAGAGTCTTTGTTTCTCCCTCGGGAGACCGACATGGAGGAGAATATACGTGCATCTTTGGCTGGAATGGAGTCTATTTATGCATTACAAAAACTTGTCACGGATAAGATCAGGAGTTCAATTGAGGAGAAGGTTAGTGAAATTAAGAATTTAAAGGAGACAGTTGCCCAGTTGCTCAAGGAGAAAGATCATATTGGATATCTACTGAGGAGTGCATTATCGAAGAGGATGACATCTGATCCCTCTTCAAAAGCAAATCAATTGTTTGAAGTTGCAGAGAATGGTTTAAGAGAGGCTGGCATTGAGTTCAAATTCAGCAAGCTTCTTGGAGACGAGAAGTTCCCGACTTCCCGGGACAATGGGAAAGCGCTAGATGCAGAGGACGACGACGAAATATTCACTCTGGCTGGTGCTCTGGAGAATATTGTTAAGGCGTCTCAGATTGAGATCATTGAGTTACGGCATTCCCTGGAGGAATTAAGGGCAGAGTCGGTTGTACTTAAAGAGCACCTAGAATCCCAATCCAAGGAGCTTAAACTTAGATCACTTCAAATTAAGGAACTTGAAGAGAAGGAGAGAATTGCCAATGAAAGTGTTGAAGGGTTAATGATGGACATTACAGCCGCAGAAGAAGAAATCATGAGATGGAAGCTAGCTGCAGAGCAGGAAGCTGCTGCTGGCAAAGCTGTTGAACAAGAGTTTCTGGCACAGATCTCGGCGGTTAAACAGGAACTTGAAGAAGCAAGACAGGGGATGTTGGATTCAGACAAAAAACTCAAGATGAAAGAAGAGACAGCAAATGCTGCTATGGCAGCCAGAGATGCAGCTGAGAAGTCACTGAGGCTAGCCGACGTGAGGGCGTCTAGGTTGAGGGAGAGGGTGGAAGATCTTACTCGTCAGCTCGAAGAGCTCGATAACCGGGAAGGTTCGAGAAGAGGATTAAATGGACATAGATACGTTTGCTGGCCGTGGCAGTGGCTTGGACTCGACTTCGTTGGTTCTCGTAGCTCGGAAACACAAGAAGAGAGTTCAAACGAGATGGAACTTTCTGAGCCACTTCTCTGA 2088 44.88 MASGVDEDADAVLSDVEGDDPVPIVIQNTSPEEISVERFREILAERDRERKAREAAENSKSELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQKDEVSSVRDEIGKQLDEILKERDGLRSEIGNASHMLVTGIDKISSKASNFKNFTAGGLPRSQKYTGLPAVAYGVIKRTNEIVEELIRQIDTTTKSRNETREQMDLRNYEIAIEISQLEATISGLREEVSKKTSDIEDLENTISEKDKKMSEIEADLSGKLNRAEDEASELRQLTQDYDDKLRILEAKMESQRPLLVDQLNFISKIHDQIYDIVKIVDGSDADHSEFSESLFLPRETDMEENIRASLAGMESIYALQKLVTDKIRSSIEEKVSEIKNLKETVAQLLKEKDHIGYLLRSALSKRMTSDPSSKANQLFEVAENGLREAGIEFKFSKLLGDEKFPTSRDNGKALDAEDDDEIFTLAGALENIVKASQIEIIELRHSLEELRAESVVLKEHLESQSKELKLRSLQIKELEEKERIANESVEGLMMDITAAEEEIMRWKLAAEQEAAAGKAVEQEFLAQISAVKQELEEARQGMLDSDKKLKMKEETANAAMAARDAAEKSLRLADVRASRLRERVEDLTRQLEELDNREGSRRGLNGHRYVCWPWQWLGLDFVGSRSSETQEESSNEMELSEPLL 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9030217 9034675 + CmoCh18G007270.1 Cmo18g00727 402500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00727 695 Coils Coil 88 143 - -
Cmo18g00727 695 MobiDBLite consensus disorder prediction 1 24 - -
Cmo18g00727 695 Gene3D - 46 302 - -
Cmo18g00727 695 PANTHER OS08G0559800 PROTEIN 1 695 IPR040300 -
Cmo18g00727 695 Coils Coil 484 546 - -
Cmo18g00727 695 Coils Coil 621 648 - -
Cmo18g00727 695 Coils Coil 229 302 - -
Cmo18g00727 695 Coils Coil 382 402 - -
Cmo18g00727 695 Coils Coil 197 217 - -
Cmo18g00727 695 PANTHER PARAMYOSIN 1 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00727 - - - cmo:103502774 1110.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02048 Cmo-Chr4:11404288 Cmo18g00727 Cmo-Chr18:9030217 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g613 . . . . . . . Bma15g00227 . Cmo18g00727 . Cma18g00735 . Car18g00683 . Cpe09g00554 . . . . . . . . . . . . . . . Cone13ag1093 Cone19ag1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009045 1 0 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00727 Cmo_Chr18 FPKM 3.155039 0.0 3.286823 3.471838 12.154182 9.498617 8.761962 5.216907 3.622042 3.764387