Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00757 ATGGATGAAAAGAGGGTGGCCGGTTGTACTCGTAACGCGTTTTTCCGGTCGGTTTCGTGGTCGGAACGGTCACCGTCGAAGCCCCGTGATAATCGGAGCTTAGTGTCGAATAGTAATAAAGCTCGGTTATGTTTGCCGCCGCTGCAGCCGCTTTCGATCAGTCGCCGGAGTGTTGAGGAGTGGCCACCGGCGGGTTGTGATGATCTTGGTGTTTGGCCAAACCCAGAAACTCCGAGAGAGGTTGTTGATGATAAGGCTGTGAGGGAATTTGAGTTTAAGAAGGATAAACTTGCGTATTTTGATAAGAAATGCTCGAAAATTCTTGATCATGTGTATTTAGGGAGTGATTCTGTGGCTAAGAATCGAGAGGTTTTGAGGCAGAATGGGATCACTCATGTGTTGAATTGTGTTGGGTTTGTGTGTCCTGAGTATTTCAAGGGTGAATTCGTTTACAAAACTCTTTGGTTGCAAGATACTCCTTCAGAGGATATTACTAGCATTCTCTATGATGTATTTGATTACATTGAAGATGTTTGTGAGCTCGGTGGTCGGGTTTTCGTGCATTGTTTTCAAGGAGTGTCTCGGTCGACTTCTCTTGTAATAGCGTACCTTATGTGGAAGGAAGGTCGGAGCTTTCAGGATGCTTTTCAATCGGTAAAGGCTGCTCGAGGGGTGGCTAATCCGAACTTGGGGTTTGCTTGTCAATTATTGCAGTGCCAGAAGCGGATTCATGCCCTGCCTGCTAGCCCGGATTCGACTTTGAGGATGTATAGGATGGCTCCTCATTCATCTTATGATCCACTTCATCTTGTACCTAAGATGTTGAACACTCCGACTGTCCAAGGGCTTGATTCTCGTGGGGCATTTGTCGTGCACGTTCCTTTGGCTATCTATGTCTGGGAGGGGGAGAAGTGCGACTCTGTGATGTTGAACTCGGCTAAGGCAGCAGCGTCGCAGATCATTCGATACGAAAAGGCAAGAGGCCCTATCCTTAGCATCAAAGAAGGTGATGAACCATTGGGATTTTGGAAAGCTTTGATGGATGGCCAAAATTTGGCTGATAATTCCAAAGGGCAAGTTCGGAAGGTTGAGGAGTATAATCCAGATTTCGAAATTTTTCACAGGGCGATTTCGGATGGGGTTGTTCCACCTTTCGATATATCTAATACCGATTCAGAAAATTACCTTCCCGTTAGAGAAAATGGGTGGGACACGACCAAAAGCAAGATCGAAAACGAAACTACAGAAGATATTGTGACATTCTTTTCAGAATTGGATTGTGATACTAAAGGAGCATTTGATGATATGGACATGATGACTGCAAATATTGATGAAGATCCAAATGAACCTGTTTCATCAATTGACCTTGCATCTCCACCACTTTCACCCACAGCCTATTTGTGTGACTCACCTGAATCTTTTGACTGTTTTCCAGCTCGTAGCTTGGATCCGGAAATAGAAGATTCTAAGGTGAGCTCGATCCCAGACGATCCTTTATCGTTACCGATTCATCCTCTGGGATCACCCGATTCATTTTCGAGTTTTCAAGGAAGGACTAGTCCAAAGTTTGGCACCAAATCCCCTTCACTCTCTCCTTCTACATCTGATAACTCGAGTTCATTTACCTTTTCACCATCATCGTCTAATTGGTCCGACTTATCGTATATGTCTTCTCAGCAACCATCACCGTCCGACGTGGATTCAGTACATCCAGCTGTTAAAAACTCTTCCATCATAGATAATTTTTGTTTAAACCACAAAGAAACTCATCCTATCTTTGTAGAGTCCTTTCCCTCTTACCCCATTTTAAGGACAGGAAACACGAATTTGACATCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTGGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAAATAGTTCGGTCATCATCGTTTTCTTTGCTCACCTTAGACGACGATGCATTGGAGATAGCAGGGTGCAGCCAATCCAATAATAAAAGCAGTACTAAAGATCTAAATTTGGACATAGATAGATTTGAGGCTTGCACTGAATTAGAATACAAGTTTGCAGAAGCAGAAACGGCAATCTTTTACCAGTGGCCTTCAATGAATACAGTGGAGATCAATCAATTTGGGAATCTCAATTCTAGATCAGTGTATATATTGTTTGCACCAGATAAAAATTTGGATTCAAACGGCTACAACAACTTATTTATCTGGCTGGGGAGTGAAGTTTTGCATAAAAACGACGACGGTCAACGAATGAGCGACGACAATGAAGATGGACATCTTCACTGGGAGATGATCGGACGTATATTCATTAACAATAAGGGAATTCCTAGAGATACGAAAATACAGATAATAAGAGAAGGTGAGGAGCCAGAGAAGTTCCTTGCACATATAAGCCATTCATTACCTCAAAAAACAGAATGTGTTGATCTGTGGTCGGTGAAGACTTGA 2481 43.61 MDEKRVAGCTRNAFFRSVSWSERSPSKPRDNRSLVSNSNKARLCLPPLQPLSISRRSVEEWPPAGCDDLGVWPNPETPREVVDDKAVREFEFKKDKLAYFDKKCSKILDHVYLGSDSVAKNREVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLQDTPSEDITSILYDVFDYIEDVCELGGRVFVHCFQGVSRSTSLVIAYLMWKEGRSFQDAFQSVKAARGVANPNLGFACQLLQCQKRIHALPASPDSTLRMYRMAPHSSYDPLHLVPKMLNTPTVQGLDSRGAFVVHVPLAIYVWEGEKCDSVMLNSAKAAASQIIRYEKARGPILSIKEGDEPLGFWKALMDGQNLADNSKGQVRKVEEYNPDFEIFHRAISDGVVPPFDISNTDSENYLPVRENGWDTTKSKIENETTEDIVTFFSELDCDTKGAFDDMDMMTANIDEDPNEPVSSIDLASPPLSPTAYLCDSPESFDCFPARSLDPEIEDSKVSSIPDDPLSLPIHPLGSPDSFSSFQGRTSPKFGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSQQPSPSDVDSVHPAVKNSSIIDNFCLNHKETHPIFVESFPSYPILRTGNTNLTSRGASPSIAERRGSHPPPGMLLPSIEEACKVQRKIVRSSSFSLLTLDDDALEIAGCSQSNNKSSTKDLNLDIDRFEACTELEYKFAEAETAIFYQWPSMNTVEINQFGNLNSRSVYILFAPDKNLDSNGYNNLFIWLGSEVLHKNDDGQRMSDDNEDGHLHWEMIGRIFINNKGIPRDTKIQIIREGEEPEKFLAHISHSLPQKTECVDLWSVKT 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9203880 9207559 + CmoCh18G007570.1 Cmo18g00757 402530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00757 826 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 12 805 - -
Cmo18g00757 826 SUPERFAMILY Actin depolymerizing proteins 713 810 - -
Cmo18g00757 826 SMART dsp_5 103 242 IPR020422 GO:0006470|GO:0008138
Cmo18g00757 826 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
Cmo18g00757 826 CDD DSP 104 238 - -
Cmo18g00757 826 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Cmo18g00757 826 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 245 IPR029021 -
Cmo18g00757 826 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Cmo18g00757 826 PANTHER MKPA PROTEIN 12 805 - -
Cmo18g00757 826 Gene3D Severin 703 808 IPR029006 -
Cmo18g00757 826 MobiDBLite consensus disorder prediction 507 542 - -
Cmo18g00757 826 Gene3D Protein tyrosine phosphatase superfamily 76 245 IPR029021 -
Cmo18g00757 826 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 223 IPR000387 GO:0016311|GO:0016791
Cmo18g00757 826 Gene3D Severin 254 354 IPR029006 -
Cmo18g00757 826 MobiDBLite consensus disorder prediction 608 628 - -
Cmo18g00757 826 MobiDBLite consensus disorder prediction 487 542 - -
Cmo18g00757 826 SUPERFAMILY Actin depolymerizing proteins 250 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00757 - - - csv:101203370 1282.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01282 Cmo-Chr4:6496236 Cmo18g00757 Cmo-Chr18:9203880 0 dispersed
Cmo10g00017 Cmo-Chr10:117082 Cmo18g00757 Cmo-Chr18:9203880 3.77E-20 dispersed
Cmo18g00757 Cmo-Chr18:9203880 Cmo19g01082 Cmo-Chr19:9311595 6.05E-11 dispersed
Cmo06g00943 Cmo-Chr6:7252324 Cmo18g00757 Cmo-Chr18:9203880 8.31E-11 transposed
Cmo08g01140 Cmo-Chr8:7275567 Cmo18g00757 Cmo-Chr18:9203880 2.33E-24 transposed
Cmo18g00757 Cmo-Chr18:9203880 Cmo04g01870 Cmo-Chr4:9385055 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00757 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.07503 0.167595 0.0 0.0 0.089654 0.0