Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00787 ATGAAACCTCACGATTTCTCCTTCTTGATCCGAGTTCTTTTGATTCTCTTGTTTCGTTTTGTAATTCAGTCTGCGGCTGATCCGAGAGCCACTGAGGTGGCTCTCATATGTTCGAACAACACCGCTTCGCCGCTGGAGCGATCTACCTTCGTGACGAATTTCTTGGCGACGATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATTTGCAAACGTTGTGAACGGGACTGGAAATACGACGGTTTATGCGTTTGGTCAGTGTATGAATGATCTTACTCAATCGGACTGCGATCTCTGTTTCGCGCAGATGAAAACTCAGATCCTGCGGTGTCTTCCCTTTCAGCTTGCTACTCGCGGAGGTAGACTGTTCTATGATGGATGCTATGTTAGGTATGATTATTATAATTTCTTCAATGAATCTTTGAGTGCTGTGGATAGGCCTGTATGTGGGAAGGTGGATTATGGAGGGAATCGGACCATTTTTAGTGATAACGCTATGAAATTAGCGAGGAATTTGAGTGTAGTAGCGCCCAAGAACGATGGATTTGCTGTAGGATTGGTGGATTTTAGGAATGTCTCGGTTTATGGATTGGCTCAGTGTTGGAAATTTGTGAGAGGGGATTCTTGCTCGAAGTGTTTGGCTGATGCAGCTAAGGAAATTGCTACCTGTCCTCCAAAAGCCGATGGAAGGGTGCTGAATGCTGGCTGCTTCTTCAGATATTCAACTGAACGATTCTACTTCAATAGCACGGCGACCGCCACCGGAGGAAATGGAAGGAGTCGTCTAGCGATAATTTTGGCTTCGGTATCGGCTGCTGTGGCTGCTGCATTGATTTTTGCAACGGCTGTTTTCTGTGCCAGAAGGAAAGTAGTGAGGAAGCGCAGAGAGAAGAAGCACCTTGGTCCTCTTGTGGCTCTTGTTAACAAGTCCAAGCTTAATTTTTCATACGAGACCCTTGAGAGGGCCACTAATTACTTCGACCAATCCAATAAACTTGGACAAGGAGGCTCTGGTTCAGTTTATAAGGGAACTCTGTCAGATGGTCGAGTCGTAGCAATCAAGAGGCTGTTCTTCAACACGAGACAATGGGTGGATCATTTCTTTAATGAAGTAAACTTGATAAGTGGCATCCGACACAAAAATCTTGTCGGGCTGTTGGGATGCAGTATTACTGGTCCTGAAAGCCTCCTTGTTTATGAATATGTGCCAAATCAAAGCCTGCACGATTACCTTTTTGGTAACAAGAACGTGCAGCCACTGAGTTGGGCATCCAGGTTTAAGATTGTGTTGGGAACAGCTGAAGGGTTGGCTTATCTTCATGAGGAGTCAGATTTGAAAATCATTCATCGGGACATAAAGTTGAGCAATATTCTACTGGACAATGATTTCACTCCAAAGATTGCTGATTTTGGACTTGCTAGAATGCTTCCTGAAGATAAGACACACATTAGCACTGCAATTGCTGGCACACTAGGTTACATGGCTCCCGAGTATGTAGTACGTGGCAAGTTGTCTGAGAAGGCCGATGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTTATCACAGGAAGGAGGAATGGTCACTTCTATCAAGATTCAACCTCCATCTTACAAAGGGTATGGAATTTTTATGGAGAGGGAAGGCTATATGCAGCTGTCGATCCTACCCTTGGAGGCGATTATCCACGAGACCAAGCGTCGTGGTTGCTTCAAATAGGTCTAGTTTGTGTGCAAGCCTTTGCTGACTTAAGGCCATCCATGTCAATGGTTGTGAAAATGCTTAATGGAAACTATGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAAGCGGAGACATCAAAAAACACAATTCATCAGACTCATCCAATCCCAATCTCTACTCCAACTCGAAAAATTCACAAACTAGCATGACTCAAAGCATCATCGATCCTAGATGA 1950 44.56 MKPHDFSFLIRVLLILLFRFVIQSAADPRATEVALICSNNTASPLERSTFVTNFLATMDAVTPLIASQRFANVVNGTGNTTVYAFGQCMNDLTQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDYYNFFNESLSAVDRPVCGKVDYGGNRTIFSDNAMKLARNLSVVAPKNDGFAVGLVDFRNVSVYGLAQCWKFVRGDSCSKCLADAAKEIATCPPKADGRVLNAGCFFRYSTERFYFNSTATATGGNGRSRLAIILASVSAAVAAALIFATAVFCARRKVVRKRREKKHLGPLVALVNKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWASRFKIVLGTAEGLAYLHEESDLKIIHRDIKLSNILLDNDFTPKIADFGLARMLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNGHFYQDSTSILQRVWNFYGEGRLYAAVDPTLGGDYPRDQASWLLQIGLVCVQAFADLRPSMSMVVKMLNGNYEIPQPKQPPYLHPSSGDIKKHNSSDSSNPNLYSNSKNSQTSMTQSIIDPR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9409551 9414410 + CmoCh18G007870.1 Cmo18g00787 402560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00787 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cmo18g00787 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 20 624 - -
Cmo18g00787 649 Gene3D Transferase(Phosphotransferase) domain 1 403 605 - -
Cmo18g00787 649 Pfam Salt stress response/antifungal 158 243 IPR002902 -
Cmo18g00787 649 Pfam Salt stress response/antifungal 37 133 IPR002902 -
Cmo18g00787 649 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Cmo18g00787 649 ProSiteProfiles Gnk2-homologous domain profile. 31 137 IPR002902 -
Cmo18g00787 649 SUPERFAMILY Protein kinase-like (PK-like) 313 627 IPR011009 -
Cmo18g00787 649 Gene3D Phosphorylase Kinase; domain 1 286 402 - -
Cmo18g00787 649 CDD STKc_IRAK 333 597 - -
Cmo18g00787 649 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 624 - -
Cmo18g00787 649 MobiDBLite consensus disorder prediction 603 649 - -
Cmo18g00787 649 Gene3D - 148 246 IPR038408 -
Cmo18g00787 649 Gene3D - 30 137 IPR038408 -
Cmo18g00787 649 Pfam Protein kinase domain 328 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00787 649 MobiDBLite consensus disorder prediction 619 649 - -
Cmo18g00787 649 ProSiteProfiles Protein kinase domain profile. 327 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00787 649 ProSiteProfiles Gnk2-homologous domain profile. 143 246 IPR002902 -
Cmo18g00787 649 SMART serkin_6 327 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00787 Cmo-Chr18:9409551 Cmo03g00536 Cmo-Chr3:5440855 7.59E-102 dispersed
Cmo12g00019 Cmo-Chr12:116551 Cmo18g00787 Cmo-Chr18:9409551 3.78E-134 wgd
Cmo14g00677 Cmo-Chr14:3463304 Cmo18g00787 Cmo-Chr18:9409551 0 wgd
Cmo18g00787 Cmo-Chr18:9409551 Cmo05g00039 Cmo-Chr5:147272 7.55E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75068 PF00069 Pkinase 7.50E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00787 - - csv:101218749 1129.78