Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00789 ATGGAAGAAATGTACGGTTTGCAATCGACGGCGGAGTATTCTGATAAGGCGTTGATGTCACCGGAGAATCTGATTCTGCCTCCGGATTATCAGAGCCTACTGGTTACTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCGGCGGCGGCTTCGGTGATTTCGGAAGCTGAAGCAGCGTCGATCACGATGGAAATTCAATGTGAAGAAGATATGGTGAACGTGATCAAAGCTAAAATTTCTTCTCATCCTACTTATCCTCGATTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGAGCGCCTCCGGCGATTTCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACATTTGTAACCGTCACGCTGTAACCACGTGCTTAGGCGTCGATCCTGAACTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAGAGGCCCTTCGACGAAGCAACCACGTTCTTGAATAAGATCGAGCTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGAGCTGTCTCGTCGGATGAAGAGTTGAGTGGAGGAGAGATGGAAGCTGTGGAGGCGGAGACTCAAACCAAAGGCGAGAAAAGGGATCTCAAGGATAAGCTATTACGCAGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACCCTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTGGAAGGAGTGGATGAGCTTTCTTCAGGTAGATTCTTCAGAGAGGACTGA 975 46.46 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVTSGEFRDRIPVFGSNELLSAAASVISEAEAASITMEIQCEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPAISHLLEGIRQESDICNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDEGAVSSDEELSGGEMEAVEAETQTKGEKRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQLEGVDELSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9414147 9420399 - CmoCh18G007890.1 Cmo18g00789 402562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00789 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Cmo18g00789 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Cmo18g00789 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Cmo18g00789 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 310 - -
Cmo18g00789 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 310 - -
Cmo18g00789 324 SUPERFAMILY Homeodomain-like 241 311 IPR009057 -
Cmo18g00789 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Cmo18g00789 324 SMART ELK_2 220 241 IPR005539 GO:0003677
Cmo18g00789 324 CDD homeodomain 252 304 IPR001356 GO:0003677
Cmo18g00789 324 MobiDBLite consensus disorder prediction 194 217 - -
Cmo18g00789 324 Gene3D - 238 312 - -
Cmo18g00789 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Cmo18g00789 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Cmo18g00789 324 Pfam ELK domain 220 241 IPR005539 GO:0003677
Cmo18g00789 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Cmo18g00789 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Cmo18g00789 324 SMART HOX_1 242 307 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01084 Cmo-Chr5:8704389 Cmo18g00789 Cmo-Chr18:9414147 1.04E-81 dispersed
Cmo12g01030 Cmo-Chr12:9633083 Cmo18g00789 Cmo-Chr18:9414147 6.88E-77 dispersed
Cmo18g00789 Cmo-Chr18:9414147 Cmo04g01834 Cmo-Chr4:9211224 0 wgd
Cmo18g00789 Cmo-Chr18:9414147 Cmo05g00037 Cmo-Chr5:133814 6.55E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11518 PF03791 KNOX2 1.20E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00789 - - csv:101211876 590.497