Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00789 | ATGGAAGAAATGTACGGTTTGCAATCGACGGCGGAGTATTCTGATAAGGCGTTGATGTCACCGGAGAATCTGATTCTGCCTCCGGATTATCAGAGCCTACTGGTTACTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCGGCGGCGGCTTCGGTGATTTCGGAAGCTGAAGCAGCGTCGATCACGATGGAAATTCAATGTGAAGAAGATATGGTGAACGTGATCAAAGCTAAAATTTCTTCTCATCCTACTTATCCTCGATTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGAGCGCCTCCGGCGATTTCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACATTTGTAACCGTCACGCTGTAACCACGTGCTTAGGCGTCGATCCTGAACTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAGAGGCCCTTCGACGAAGCAACCACGTTCTTGAATAAGATCGAGCTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGAGCTGTCTCGTCGGATGAAGAGTTGAGTGGAGGAGAGATGGAAGCTGTGGAGGCGGAGACTCAAACCAAAGGCGAGAAAAGGGATCTCAAGGATAAGCTATTACGCAGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACCCTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTGGAAGGAGTGGATGAGCTTTCTTCAGGTAGATTCTTCAGAGAGGACTGA | 975 | 46.46 | MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVTSGEFRDRIPVFGSNELLSAAASVISEAEAASITMEIQCEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPAISHLLEGIRQESDICNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDEGAVSSDEELSGGEMEAVEAETQTKGEKRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQLEGVDELSSGRFFRED | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 9414147 | 9420399 | - | CmoCh18G007890.1 | Cmo18g00789 | 402562 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00789 | 324 | ProSitePatterns | 'Homeobox' domain signature. | 278 | 301 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo18g00789 | 324 | ProSiteProfiles | ELK domain profile. | 220 | 240 | IPR005539 | GO:0003677 | |
Cmo18g00789 | 324 | ProSiteProfiles | 'Homeobox' domain profile. | 240 | 303 | IPR001356 | GO:0003677 | |
Cmo18g00789 | 324 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 310 | - | - | |
Cmo18g00789 | 324 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 1 | 310 | - | - | |
Cmo18g00789 | 324 | SUPERFAMILY | Homeodomain-like | 241 | 311 | IPR009057 | - | |
Cmo18g00789 | 324 | Pfam | KNOX1 domain | 82 | 123 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo18g00789 | 324 | SMART | ELK_2 | 220 | 241 | IPR005539 | GO:0003677 | |
Cmo18g00789 | 324 | CDD | homeodomain | 252 | 304 | IPR001356 | GO:0003677 | |
Cmo18g00789 | 324 | MobiDBLite | consensus disorder prediction | 194 | 217 | - | - | |
Cmo18g00789 | 324 | Gene3D | - | 238 | 312 | - | - | |
Cmo18g00789 | 324 | Pfam | KNOX2 domain | 134 | 180 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo18g00789 | 324 | SMART | KNOX1_2 | 80 | 124 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo18g00789 | 324 | Pfam | ELK domain | 220 | 241 | IPR005539 | GO:0003677 | |
Cmo18g00789 | 324 | SMART | KNOX2_2 | 130 | 181 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo18g00789 | 324 | Pfam | Homeobox KN domain | 260 | 299 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo18g00789 | 324 | SMART | HOX_1 | 242 | 307 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01084 | Cmo-Chr5:8704389 | Cmo18g00789 | Cmo-Chr18:9414147 | 1.04E-81 | dispersed | |
Cmo12g01030 | Cmo-Chr12:9633083 | Cmo18g00789 | Cmo-Chr18:9414147 | 6.88E-77 | dispersed | |
Cmo18g00789 | Cmo-Chr18:9414147 | Cmo04g01834 | Cmo-Chr4:9211224 | 0 | wgd | |
Cmo18g00789 | Cmo-Chr18:9414147 | Cmo05g00037 | Cmo-Chr5:133814 | 6.55E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11518 | PF03791 | KNOX2 | 1.20E-24 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00789 | - | - | csv:101211876 | 590.497 |