Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00800 ATGAGAGTTTATGCTCTTATGCTCAAACTCGACAATATCATATCATTTTGGAGATCTGTGATTCCTAACACGGTTATCAGAGCCATGCTCCAGGAGGTGACCCTTATTCTAGCCAACAACTTGTTCGTCAGGGTTTTAGCTTTCAATGTTTCACCACACTTCAATTCCAGCCCTCTCAACTTCTTCCCCAACGAAGACCTAGCGCCTACCTACCCTACGATTTCCCCTGGAATGGATCTTGAGGTCACGCCGGCCGGAGCCAACTCAGACACTCGATCAGACGCTCGGATATCTCATTTGGCATTGGATATTGGAGGAACTCTTGCTAAATTGGTGTATTTCTCTGGGAACGAGAAACTGTTGAATGATGATCGAGTTCAGAGTTCTGCAGAAGTTGGTGGAAGAAGTAGTTCCATTCTCCATGGGAGGCTCCACTTTGCCAAGTTCGAAACTGGAAAAATTGATGAGTGTGTAGCGTTTATTAACAGCAAGGAACTCGGTTCCCAGCACCCAAAGGAACTTGGCAATGGAAAAATTGTAAAGGCCACTGGTGGTGGAGCATTTAAATTTGCAGATCTCTTCAAGGAAAAGCTTGACGTTTGTCTAGATAAGGAAGATGAAATGGATTGCCTTGTTGCTGGAGCAAATTTTCTCCTGAAGGCAGTCCACCAAGAAGCATTTACATACATAGGCGGTCAGAAGGAATTTGTGCAGATTAACCAAGATGACCTGTACCCTTTCCTCCTTGTAAACATTGGTTCTGGAGTCAGCATGATTAAGGTGGATGGAAATGGAAAGTTTGAGCGGGTAAGTGGAACGAGCCTTGGTGGCGGGACATTTTGGGGTTTGGGTAAGCTTTTGACAAAGTGCAATAGTTTTGACGAGTTGTTGGAGTTGAGTCAGCAAGGGAACAATAGAGTGGTAGACATGCTTGTTGGAGATATATATGGTGGAGGAGATTATAATAAGATTGGTCTTTCATCCACAGCCATTGCTTCTAGCTTTGGCAAGACTGTTTCAGCAAACAAAGTGCTTGAAAATTACAGGACTGAGGATCTCGCTCGGTCCCTTCTAAGAATGATTTCAAATAACATCGGACAGCTTGCCTATCTTACTGCACTTCGATTCGGACTTAGGCGGATATTTTTCGGAGGATTCTTCATACGTGGTCAATGTTATACAATGGACACCATATCCGTTGCCGTTCATTACTGGTCGAAGGGTGATGCACAAGCAATGTTCATGCGGCATGAAGGATTTCTTGGGGCCTTGGGTGCTTTTATGAGCTATAACAAACAGGGCCCTGATAACTTCATACATCTCATGAAACAAGACCCAAAACACGAGCCAGAGTTTGATGGTACAGCGCCGGAAGAGGAAGACAGTGAGTATGCAAGTATAGATTGTTTCTTGGATTTGGCTTAG 1425 44.28 MRVYALMLKLDNIISFWRSVIPNTVIRAMLQEVTLILANNLFVRVLAFNVSPHFNSSPLNFFPNEDLAPTYPTISPGMDLEVTPAGANSDTRSDARISHLALDIGGTLAKLVYFSGNEKLLNDDRVQSSAEVGGRSSSILHGRLHFAKFETGKIDECVAFINSKELGSQHPKELGNGKIVKATGGGAFKFADLFKEKLDVCLDKEDEMDCLVAGANFLLKAVHQEAFTYIGGQKEFVQINQDDLYPFLLVNIGSGVSMIKVDGNGKFERVSGTSLGGGTFWGLGKLLTKCNSFDELLELSQQGNNRVVDMLVGDIYGGGDYNKIGLSSTAIASSFGKTVSANKVLENYRTEDLARSLLRMISNNIGQLAYLTALRFGLRRIFFGGFFIRGQCYTMDTISVAVHYWSKGDAQAMFMRHEGFLGALGAFMSYNKQGPDNFIHLMKQDPKHEPEFDGTAPEEEDSEYASIDCFLDLA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9473278 9477709 + CmoCh18G008000.1 Cmo18g00800 402573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00800 474 SUPERFAMILY Actin-like ATPase domain 197 430 IPR043129 -
Cmo18g00800 474 Pfam Fumble 99 428 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cmo18g00800 474 TIGRFAM panK_eukar: pantothenate kinase 99 429 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cmo18g00800 474 PANTHER PANTOTHENATE KINASE 94 444 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cmo18g00800 474 SUPERFAMILY Actin-like ATPase domain 97 224 IPR043129 -
Cmo18g00800 474 Gene3D - 91 238 - -
Cmo18g00800 474 PANTHER PANTOTHENATE KINASE 1 94 444 - -
Cmo18g00800 474 Gene3D - 306 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00800 K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase [EC:2.7.1.33] - csv:101216215 655.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00128 Cmo-Chr18:914635 Cmo18g00800 Cmo-Chr18:9473278 3.84E-163 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g684 . . . . . . . . . Cmo18g00800 . Cma18g00796 . Car18g00727 Sed06g1641 Cpe09g00506 . Bhi07g01734 Tan04g1242 Cmetu10g1660 Lac13g0197 Hepe10g1637 . . Cla05g02545 Cam05g2735 Cec05g2766 Cco05g2806 Clacu05g2736 Cmu05g2589 Cre05g2703 . . . . Lsi04g00554 Csa05g02334 Chy10g00902 Cme10g00526 Blo06g00878 . Bda07g01607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008331 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00800 Cmo_Chr18 FPKM 22.11788 23.837343 23.878975 24.231054 23.956268 24.054947 25.16362 25.548939 27.742554 26.599464