Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00802 ATGTCTTCTTCAAACGATACTGCTATTTCTTCATCACATTCTGATTTGGATTCTTCTCCTCCTCCTTCTCCTTCTTCGCCGCAGTCAGATGGTTTATCGTTGATGTCGAATGAAGATGCTTCTGAATCGCCCATTGTTTCATCGAAAATTAAATCTCCGCCTGCCGATGACGGAGGTTCACCGTCTTCCACACCGAAACCAAACGTTGGATCTTCAACGCCGCCCCCGATTGATTCCTCTAATTCAGGTTCATCCAAAGAGAATCCATCGCCACCTCCTGTACCTTCCGCTTCCGCTTCCCCACCGCCATCTCCTACTTTTCCTCCTCCTTCTCCTCTTTTGATACCTTCACCACCGCCACCACAACTGCCGTCTGAGAGCGGCAGTGATAATCCTCCGCCTTCCTCTGTTCCAACAAAAGGCTCTCCGGCATCTCCAGGAAATCCATCTTCTCCAATACCGGGGAATAATCCCTCTACTCCGACGAATAACGGTGCAGCTTCGGGTTCTAATACAGCCAAGGAGCTTCCACCATCTGAATCGACTGATTCTCCTCCTCAATCAGAAAATACAGTCGTGATTCCTTCACCAGGTGCAAATCCGGCGAGGGGGAAACGAAATCCGAGTCCACCTCAAGAGGCGACTTCTCCCACATCAGACTCTAACATCTTTCAACCTCCCACAACACCATCCACATCCAATAGTACTCTAGACAACTTACCTCAGTCCTCCGACTCAACGCCGGTGGAAACTCCATTAAGGCAATCCAATGCACCATCGTCACCTTCAAGTAGTCAAACAAAAGTTGCAGTAGGCGTTGTAGTAGTTGGAGTTATTGTAATTGTTATGGTTGCCGTAATTTTTATATTCACAAGGAAGAAGAAAAGACGGGGAGACTTGGAGAATGGCCCATACTTGCCTCCTAACAACTTCTGTGAGAAATCAGATGGAAATTACAATCCGGATCAACATAGTGGGAACTCTGGCTCGGCAGAAGGCTTCTATACCCAGGTCCCGCATACTCCTGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGAGACAGAGGCAGTGGAGTGGATTCAGGTGTGATAAACAGTGCTAAGTTCTTTAGCTATGAGGAGTTGATGGAGATTACCTCTGGATTTTCGCGTCAAAACGTTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTTGCTTCCAGATGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGGCAGGGGGAAAAGGAATTCAAAGCGGAGGTTGAGATTATCAGTCGCGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGGCTCTGAGAATCATAAATTGCTCATCTATGAGTTTGTTCCTAATAGAACTCTTGAGCATCATCTCCATGGCGGTATGCAACCTATCCTTCATCTCCATCACCACTTTAAAATAGCTCAAATGGGTTGTGTTGGTGTTGAAAATATTTCACTTCTCCTTGCAGGCAATGAAGTCCCCGTGTTGGAATGGTCCAAAAGACTCAAAATCGCTTTGGGATCTGCAAAGGGCTTGGCGTATCTGCATGAAGATTGTGAGTACATATCAGAAAATTCAAAGGGTTTTGCTCAACTGATCTGTTCTATTAATTTCAAATCTTCTTTTGCTGCTCTGTTCATAGGCCATCCCAAGATTATTCACAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTCGAGGCGAAGGTTGCAGATTTTGGACTTGCAAAACTAACAAATGATGCAAACACCCACGTTTCAACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTTCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCTCTCAGCCTCTAGGGGACGAGAGTTTGGTCGAATGGGCTCGACCTCTTCTCCTTCACGCCATTGAAACTGGGAAGTTCGATGGATTAATAGACCTTCGCCTTGGAAAACGTTATGTGGAAAGTCAAATGTTCAGAATGATCGAAGTAGCAGCTGCCTGCGTTCGTCATTCAGCTCCCAAAAGGCCTTGCATGGTTCAGGTGGTGAGAGCTCTGGACATTGAAAGTGACATGTCCGACCTCACCAATGGTGTCAAATTTGGGCAGAGCACTACCTATGATTCTGAACAATACAGTGAAGACATTTCTAACTTCAGGAAACTGGCGTTCGAAGACAGCCCCGACTACGATGGTTACAGTAGCGAACACAATTCCGGAGAAGTGAATGCAACTCGGGAATCACGGAGAAGCCAAAATTACTCGAGTGGTGAATCAGAAACTCGAGCTTTTAAGGGACAAAGTGGCGGCGTAACACACAGTCAACATACTGGACGATAA 2430 46.5 MSSSNDTAISSSHSDLDSSPPPSPSSPQSDGLSLMSNEDASESPIVSSKIKSPPADDGGSPSSTPKPNVGSSTPPPIDSSNSGSSKENPSPPPVPSASASPPPSPTFPPPSPLLIPSPPPPQLPSESGSDNPPPSSVPTKGSPASPGNPSSPIPGNNPSTPTNNGAASGSNTAKELPPSESTDSPPQSENTVVIPSPGANPARGKRNPSPPQEATSPTSDSNIFQPPTTPSTSNSTLDNLPQSSDSTPVETPLRQSNAPSSPSSSQTKVAVGVVVVGVIVIVMVAVIFIFTRKKKRRGDLENGPYLPPNNFCEKSDGNYNPDQHSGNSGSAEGFYTQVPHTPVGNSFGSQKGTGDRGSGVDSGVINSAKFFSYEELMEITSGFSRQNVLGEGGFGCVYQGLLPDGKPVAVKQLKAGSGQGEKEFKAEVEIISRVHHRHLVSLVGYCGSENHKLLIYEFVPNRTLEHHLHGGMQPILHLHHHFKIAQMGCVGVENISLLLAGNEVPVLEWSKRLKIALGSAKGLAYLHEDCEYISENSKGFAQLICSINFKSSFAALFIGHPKIIHRDIKSANILLDDAFEAKVADFGLAKLTNDANTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPSQPLGDESLVEWARPLLLHAIETGKFDGLIDLRLGKRYVESQMFRMIEVAAACVRHSAPKRPCMVQVVRALDIESDMSDLTNGVKFGQSTTYDSEQYSEDISNFRKLAFEDSPDYDGYSSEHNSGEVNATRESRRSQNYSSGESETRAFKGQSGGVTHSQHTGR 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9482250 9485173 - CmoCh18G008020.1 Cmo18g00802 402575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00802 809 MobiDBLite consensus disorder prediction 298 327 - -
Cmo18g00802 809 Pfam Protein tyrosine and serine/threonine kinase 386 663 IPR001245 GO:0004672|GO:0006468
Cmo18g00802 809 MobiDBLite consensus disorder prediction 57 87 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 760 809 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 28 48 - -
Cmo18g00802 809 Gene3D Transferase(Phosphotransferase) domain 1 494 733 - -
Cmo18g00802 809 CDD STKc_IRAK 389 717 - -
Cmo18g00802 809 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 560 781 - -
Cmo18g00802 809 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 499 531 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 763 809 - -
Cmo18g00802 809 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Cmo18g00802 809 Gene3D Phosphorylase Kinase; domain 1 364 458 - -
Cmo18g00802 809 ProSiteProfiles Protein kinase domain profile. 383 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00802 809 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 68 485 - -
Cmo18g00802 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Cmo18g00802 809 SMART serkin_6 383 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00802 809 MobiDBLite consensus disorder prediction 157 195 - -
Cmo18g00802 809 SUPERFAMILY Protein kinase-like (PK-like) 363 716 IPR011009 -
Cmo18g00802 809 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 68 485 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 209 267 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 1 267 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 1 19 - -
Cmo18g00802 809 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 560 781 - -
Cmo18g00802 809 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 499 531 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 88 128 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 313 327 - -
Cmo18g00802 809 MobiDBLite consensus disorder prediction 136 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02967 Cmo-Chr4:20986231 Cmo18g00802 Cmo-Chr18:9482250 1.24E-158 dispersed
Cmo11g00619 Cmo-Chr11:2957148 Cmo18g00802 Cmo-Chr18:9482250 3.42E-159 dispersed
Cmo15g00209 Cmo-Chr15:1017698 Cmo18g00802 Cmo-Chr18:9482250 1.43E-164 dispersed
Cmo18g00802 Cmo-Chr18:9482250 Cmo18g01082 Cmo-Chr18:11371917 1.14E-144 dispersed
Cmo18g00802 Cmo-Chr18:9482250 Cmo04g01815 Cmo-Chr4:9151971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75069 PF07714 PK_Tyr_Ser-Thr 6.70E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00802 - - csv:101215732 868.611