Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00806 ATGGCGATGGAGCAGGATCAAACGACGAAGAAGAAGCCTCTGAATATTGACTGGGACAAGCTGTTCGGCGGCAAGGAAACGGAGCCTCCACTGGAAATAATCGTTCAGCCCTCAATTACGATCTCGAAGCACTTTGAAATGGACTCCGATCGCCAACATTTGTTAAGAGATGAATGCCAGAAGCTTAATGATGCGGAATTGGATGAAAAGATTCGCCGAATGAAGCAATTCTACGAGACTAAGGCTCGCTATTTGCCAGATGAGGGGCATAAGTATCTTCGCAATCTGGACCTGTCCATGGAAGAGAGGGAATCCAGAAAGCTCCGTCGAGTTGAAAAGGAAGCTGCTGCATGCGAAAATTGCTCACAGCCAACTACCTCAAGTACAGTTGGTTCGTCTTATGTAGCTAGTGAAAAGACTGCTTCACCTTCAGCTGATTCATTGTCCACATTCACTTCTTGTTTTTACCAGAAGTTGGAAGAAAAAACAGAATGCAATAGTAGTGCCTTCAGTCAAGATCTATCAATTTTGGGACATTGTGATAATCAGAGACAAAGATGTAATGGTAGATTATCTCCAAAAGTAAAACACAAGGGTCAAGCATCAGCAGGACAGCAGCCATTCAAATGTGCCATTAATCTTTCTACTGATGTACATGAAAAAGTTTCTTCAGTTACCGCTCAAAATTGTAAAATTCCCGATGATTTAGATTCTCACGTTAGTGAAAGGCTGCCCGGCTGTTTACGGAAGAAGGATGCTTCTCAAGTTCAGCAGTCAGATAATTCAATGCCCAGAAAGGGGCAGACCATTGTAGTTGTAGACGAGGAGGAAGCTTTGGCAATGAAAATACCAGAGCATGATGACAAATGCATGAAAGAGGCCAAGATCTACTACCCATCGCGGGATGATCCAGAATCCGTTGAAATTTGTTTTGAGGACATAAATTGTCTTGATCCAGAGGGCTATTTGACATCCACGATCATGAACTTTTATATTCGGTATTTACAGCAACAAGCATTTTCAACAAAGAAGGTGATATGCAATTATCACTTTTTCAATACTTATTTTTACGAAAAGCTAAAGGAGGCTGTATCAAACAAGGGGAAGGATAGAGAGAATTTTTTCGTCAAGTTCAGAAGGTGGTGGAAGGGCGTTAATATATTTCAAAAGGCATATGTACTGATTCCAATCCATGAGGATCTCCACTGGAGTTTGGTGATTATATGTTTTCCACAGAAGGAAGATGAATCTGGACCCATTATACTTCATTTGGATTCCCTGGGACTTCACTCTAGCCGATCAGTTTTTGATAACATTAAAAGCTTTATAAAAGAGGAATGGTGCTACTTGGATCGAGAAGTTGCTTGTTTAGATCTTCCAATGCCATATAGAATATGGAAAAATATCTCTCGGAGAATTGAAGAGAAAATAATCCAGGTTCCGCAGCAAAAGAACGACTATGACTGTGGTCTCTTTGTTCTATACTTCATCGAGCGCTTCATTGAAGAGGCTCCTGATAGGCTAAAAAGGAAGGACTTGGATATGTTTGGCAAGAGGTGGTTCAAACCCCAGGAAGCTTCCAGCTTGAGGACGAGGATAAAATGTCTGCTCAAAATAGAGTTCCAAATTTTGAAAAGGCAATGCCTGGCAGGTTCTGTTGATAGCTCCTCCTCAGATCATGCTCCAAAACAATGA 1695 41.42 MAMEQDQTTKKKPLNIDWDKLFGGKETEPPLEIIVQPSITISKHFEMDSDRQHLLRDECQKLNDAELDEKIRRMKQFYETKARYLPDEGHKYLRNLDLSMEERESRKLRRVEKEAAACENCSQPTTSSTVGSSYVASEKTASPSADSLSTFTSCFYQKLEEKTECNSSAFSQDLSILGHCDNQRQRCNGRLSPKVKHKGQASAGQQPFKCAINLSTDVHEKVSSVTAQNCKIPDDLDSHVSERLPGCLRKKDASQVQQSDNSMPRKGQTIVVVDEEEALAMKIPEHDDKCMKEAKIYYPSRDDPESVEICFEDINCLDPEGYLTSTIMNFYIRYLQQQAFSTKKVICNYHFFNTYFYEKLKEAVSNKGKDRENFFVKFRRWWKGVNIFQKAYVLIPIHEDLHWSLVIICFPQKEDESGPIILHLDSLGLHSSRSVFDNIKSFIKEEWCYLDREVACLDLPMPYRIWKNISRRIEEKIIQVPQQKNDYDCGLFVLYFIERFIEEAPDRLKRKDLDMFGKRWFKPQEASSLRTRIKCLLKIEFQILKRQCLAGSVDSSSSDHAPKQ 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9501803 9512101 - CmoCh18G008060.1 Cmo18g00806 402579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00806 564 SUPERFAMILY Cysteine proteinases 298 537 IPR038765 -
Cmo18g00806 564 PANTHER UBIQUITIN-LIKE PROTEASE 4 57 554 - -
Cmo18g00806 564 Pfam Ulp1 protease family, C-terminal catalytic domain 322 525 IPR003653 GO:0006508|GO:0008234
Cmo18g00806 564 ProSiteProfiles Ubiquitin-like protease family profile. 307 500 IPR003653 GO:0006508|GO:0008234
Cmo18g00806 564 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 57 554 - -
Cmo18g00806 564 Gene3D - 298 537 - -
Cmo18g00806 564 Gene3D - 349 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00806 K16287 ULP1C_D; ubiquitin-like-specific protease 1C/D [EC:3.4.22.68] - csv:101214614 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00574 Cmo-Chr5:2816712 Cmo18g00806 Cmo-Chr18:9501803 1.61E-35 dispersed
Cmo08g01202 Cmo-Chr8:7630633 Cmo18g00806 Cmo-Chr18:9501803 5.11E-13 dispersed
Cmo12g00152 Cmo-Chr12:986368 Cmo18g00806 Cmo-Chr18:9501803 1.54E-38 dispersed
Cmo17g00315 Cmo-Chr17:1903800 Cmo18g00806 Cmo-Chr18:9501803 2.31E-13 dispersed
Cmo18g00191 Cmo-Chr18:1291926 Cmo18g00806 Cmo-Chr18:9501803 1.46E-15 dispersed
Cmo18g00806 Cmo-Chr18:9501803 Cmo04g01811 Cmo-Chr4:9126058 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g729 . . . . . . . . . Cmo18g00806 . . . Car18g00733 . . . . . . . . . . . . . . . . . . . Cone8ag0656 Cone12ag0638 . . . . . . Bda07g01598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005400 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 3 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00806 Cmo_Chr18 FPKM 1.642899 2.330737 7.73158 7.373814 11.674076 9.66554 11.910823 14.557216 14.342015 14.681537